PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0418
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 220aa    MW: 24261.8 Da    PI: 9.4519
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0418genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-194594255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +g+W+AeIrdp   + + +r++lg+f tae Aa a+++a+++++g
  Gh_D11G0418 45 HYRGVRHRP-WGKWAAEIRDP---N-KaARVWLGTFATAEAAALAYDEAALRFKG 94
                 69****888.**********9...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.39545102IPR001471AP2/ERF domain
SMARTSM003801.2E-3645108IPR001471AP2/ERF domain
PfamPF008472.3E-134594IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2145103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-3245103IPR001471AP2/ERF domain
CDDcd000186.42E-1845103No hitNo description
PRINTSPR003671.0E-104657IPR001471AP2/ERF domain
PRINTSPR003671.0E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVQALTHVIG NDNDNNNPLP DQLHHHNQYQ YQSQHQPQGN VRRIHYRGVR HRPWGKWAAE  60
IRDPNKAARV WLGTFATAEA AALAYDEAAL RFKGSKAKLN FPERVQRSSG SGYLTISHVV  120
ERAPPPLPPP HSQPTFPNIS DDQLLSGGSN GGEAVSRPAF TSQYPTILSS SSSSSSPTLT  180
SKLQQEDLGG FLLKNIGGSL PSSDPPKNKR QCYDYYYSGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2645105263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695593.11e-163PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH541e-45EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1U8K3N21e-162A0A1U8K3N2_GOSHI; ethylene-responsive transcription factor ERF114-like
STRINGGorai.007G045100.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2431434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-29ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]