PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0473
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 206aa    MW: 23987.2 Da    PI: 8.6424
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0473genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-2049103357
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  k++++++eq++ Le +F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Gh_D11G0473  49 KKRKLSQEQVDLLEHHFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 103
                  56699************************************************95 PP
2HD-ZIP_I/II119.41.9e-3849139292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkr+ls+eqv lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE+ +++Lk+ +d+++ e++rLe+ev++L+e+l 
  Gh_D11G0473  49 KKRKLSQEQVDLLEHHFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEGFSKLKSDHDEVVLEKCRLESEVTKLKEKLC 139
                  9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.02244104IPR001356Homeobox domain
SuperFamilySSF466892.21E-1847112IPR009057Homeodomain-like
SMARTSM003891.2E-1947108IPR001356Homeobox domain
CDDcd000861.03E-1549105No hitNo description
PfamPF000461.7E-1749103IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-2151110IPR009057Homeodomain-like
PRINTSPR000311.3E-57584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000311.3E-584100IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNKLEDQMAL ISQIYLGGYP QVAPQQAESK PRRRRNKNKG GENNLSMTKK RKLSQEQVDL  60
LEHHFGNEHK LESERKDRLA SELGLDPRQV AVWFQNRRAR WKNKKLEEGF SKLKSDHDEV  120
VLEKCRLESE VTKLKEKLCE AKKEIQRLGE RVDRGSSNSP SSSLTMEAMD TPFLGEFGLE  180
GYDNVFYIAE NSYNNIPGME WMNMYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13250RRRNKNKGGENNLSMTKKR
23251RRRNKNKGGENNLSMTKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694605.11e-152PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-69ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1U8JWI11e-151A0A1U8JWI1_GOSHI; homeobox-leucine zipper protein ATHB-40-like
STRINGGorai.007G051100.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-59homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]