PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0490
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 345aa    MW: 38690.7 Da    PI: 6.7715
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0490genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.62.1e-31217272156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+peLH+ Fv+a++qLGGs++AtPk+i+e+m+v++Lt+++vkSHLQkYRl+
  Gh_D11G0490 217 KQRRCWSPELHRLFVDALQQLGGSQVATPKQIKEVMQVDDLTNDEVKSHLQKYRLH 272
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.123214274IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-28214275IPR009057Homeodomain-like
SuperFamilySSF466895.82E-18215275IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-26217272IPR006447Myb domain, plants
PfamPF002492.8E-7219270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MELSLDLSSV FVPKTITEFL KEALKIKDGF QRSSKISDYV KRLEDEMKKI DGFKRELPLC  60
MLLLKDGIER LKVEEVQCKE TNDGLPLKEN DDSDKTNWLS SVQLWNSDFN IVDHNKKPNT  120
VSELKPRSGR EEEEDMSENP IKVCNSKSRG GAFVPFKDIS GIPLMNPSFE LVSCNGILRN  180
NGGCTIGSGS SLTAEKTHIK FQTESQDQQK QQQSSRKQRR CWSPELHRLF VDALQQLGGS  240
QVATPKQIKE VMQVDDLTND EVKSHLQKYR LHIRKLPPSS ARNQCSENMK SQSGSPQCPL  300
TVSALAKGMS STGGDSMDGE DDEKSDGLSW RSGVHKPGEI ECIVR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.196600.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271018e-50HQ527101.1 Gossypium herbaceum clone NBRI_D_EYT27PB02DTG6D simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695499.10.0PREDICTED: two-component response regulator ORR25-like
TrEMBLA0A1U8K4F50.0A0A1U8K4F5_GOSHI; two-component response regulator ORR25-like
STRINGGorai.007G053100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-60G2-like family protein