PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0518
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 217aa    MW: 23468.8 Da    PI: 8.0897
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0518genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.17.8e-302103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l+ ++     p++q  ++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e
  Gh_D11G0518   2 SCNGCRVLRKGCSESCILRSCLqwidnPESQGFATLFVAKFFGRAGLMSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 
                  6*************************99********************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Gh_D11G0518 100 TVLR 103
                  9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.5791107IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR SCLQWIDNPE SQGFATLFVA KFFGRAGLMS FISAVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPI PELPAPTESN  120
EASEAAGTAD MWKLQETATS LNSNCRFSSH KRRTIGELKK LQPSDLDLCL TPSFKGNRVL  180
DNRRPGTPSV ISDESVTTAT CSESGFAGQG KLLNLFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.28111e-107boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016731001.11e-159PREDICTED: LOB domain-containing protein 38-like isoform X1
SwissprotQ9SZE89e-78LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A1U8MVY61e-157A0A1U8MVY6_GOSHI; LOB domain-containing protein 38-like isoform X1
STRINGGorai.007G056300.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.14e-80LOB domain-containing protein 39