PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0526
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 287aa    MW: 31630.7 Da    PI: 9.0097
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0526genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18141195256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk+q   Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Gh_D11G0526 141 RKKLRLTKQQSALLEESFKQHSTLNPNQKQALARQLNLKPRQVEVWFQNRRARTK 195
                  788899***********************************************98 PP
2HD-ZIP_I/II123.97.8e-40141230191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k+q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l
  Gh_D11G0526 141 RKKLRLTKQQSALLEESFKQHSTLNPNQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTNENRRLQKELQELR-SL 230
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-18126198IPR009057Homeodomain-like
PROSITE profilePS5007117.248137197IPR001356Homeobox domain
SMARTSM003892.7E-15139201IPR001356Homeobox domain
SuperFamilySSF466892.82E-18139205IPR009057Homeodomain-like
PfamPF000464.4E-16141195IPR001356Homeobox domain
CDDcd000863.13E-17141198No hitNo description
PROSITE patternPS000270172195IPR017970Homeobox, conserved site
SMARTSM003401.2E-21197241IPR003106Leucine zipper, homeobox-associated
PfamPF021838.0E-11197231IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGLDDACNTG LVLGLGFSST PETPFKADNQ TPRKSTAKVA PVTSLEPFLT LGLSGDSYGV  60
TVTKKVDVNN KGGGYLHHRH EDSPPTAAAG DLYRPGSPPS AVSSFSSGRV KRERDHSCEE  120
VEVEKNSCRV SDEDDDGVNA RKKLRLTKQQ SALLEESFKQ HSTLNPNQKQ ALARQLNLKP  180
RQVEVWFQNR RARTKLKQTE VDCEFLKRCC ETLTNENRRL QKELQELRSL KTAAQPFCMN  240
MPAATLTMCP SCERIGGVAG DGNSKNPFSM PSKPRFYKPV TNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189197RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677948.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466043e-97HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1U8INH10.0A0A1U8INH1_GOSHI; homeobox-leucine zipper protein HAT22-like
STRINGGorai.007G057100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-98HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]