PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0701
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 1219aa    MW: 135593 Da    PI: 7.7045
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0701genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.31.3e-2785910291128
          NAM    1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLp.k..........................kvkaeekewyfF 61  
                   lp G++F+P+d el+ e+L++k+   +      ++++  +++e  +i++++P++Lp k                           vk++ ++++fF
  Gh_D11G0701  859 LPIGLKFDPSDIELL-EHLAAKCGVGDlkphpfIDEFIpTLNEDqGICYTHPQNLPgKgpcptyssllmvykfdsedhfhfffaGVKKDGSSIHFF 953 
                   699************.99****988886665442222222333337**********659************9999999999888777788899*** PP

          NAM   62 skrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 
                   +++ ++yatg+rk+r          ++ +W++tgk+k+v++ +g  +g kk++v+y  ++ra+k+ek++Wvmh+y+l
  Gh_D11G0701  954 HQTINAYATGQRKRRRiqnrhstiEEHVRWHKTGKTKPVIE-NGVRKGWKKIMVLYkrSNRAHKPEKSNWVMHQYHL 1029
                   **************975677666555899************.999***********5546999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF561125.06E-82357526IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.205.1E-24374461No hitNo description
CDDcd055746.22E-176377736No hitNo description
SMARTSM002206.2E-88379716IPR000719Protein kinase domain
PROSITE profilePS5001144.584379716IPR000719Protein kinase domain
PfamPF000698.0E-37380534IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.104.0E-59462527No hitNo description
PROSITE patternPS001080500512IPR008271Serine/threonine-protein kinase, active site
SuperFamilySSF561125.06E-82605754IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.104.0E-59606756No hitNo description
PfamPF000694.6E-21613716IPR000719Protein kinase domain
SuperFamilySSF1019411.22E-28844915IPR003441NAC domain
PROSITE profilePS5100525.2868591048IPR003441NAC domain
PfamPF023653.1E-118601029IPR003441NAC domain
SuperFamilySSF1019411.22E-289441048IPR003441NAC domain
Gene3DG3DSA:2.30.29.306.9E-49601004IPR011993PH domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1219 aa     Download sequence    Send to blast
MESLAISSSK NQNLGSGIGN NDPPSTSGIP RRPSRLPLPK QSENEGLSSA YHGVRTVQNH  60
DGSIGSQKHS CKTAYDNLVC EEMPNMAKHY YDSSKMKSEL TGKILAVASK SSFKHPIDDH  120
KSSNSTASLE YEQTVSGVHY YDSSKVKSES VGKILTTASK SSSKHPIDDH KTSDSIASLE  180
YEKPVPGAHY YDSSKVKSES VRSKSSFKHP IDDHKSSNSF RSLQSEKTVP GVHYYDSSKV  240
KSESVGKIST MASKSSFKHP VVEKLVPSAI QLNNHIVSQS EPSICVSCSS SMCTRSLYAE  300
AKQSFTNTEV SECASSDESG EVSRKTSINR GSNCSDISEE SSSSCSISAI YKPHQANDIR  360
WAAIQAVRSR KGELGFKHFR VLRKLGCGDI GSVYQSELTG TNTYFAMKVM DKALLASRKK  420
LLRAQTEREI LQSLDHPFLP TLYTHFETEK LSCLVMEFCP GGDLHALRQR QPGKYFSEQA  480
ARFYVAEVLL ALEYLHMLGI IYRDLKPENV LVREDGHIML SDFDLSLRCS VSPTLVKSSN  540
STLASKHSVY CAQPACLQPT CVMQPDCIQP ACFGPRLFPS KSKKEKKSKI KSETNQQVSP  600
LPELIAEPTN ARSMSFVGTH EYLAPEIIKG QGHGSAVDWW TFGIFLYELL FGKTPFKGAE  660
NRATLFNVIG QPLRFPEYPN VSFAAKDLIR GLLVKEPQHR LAYRRGATEV KQHPFFQSVN  720
WALIRCANPP EVPKPSMTDF FAGTNMAKAP TNNMVPGLDV KPSETSVVNI SLNRNEESQV  780
AAQSLLIQNG LDLGSVNGGT YICLSPKLSR SWLIDSRSIA KKVKNAIQIT DPDCGANREC  840
PNCHCRIDNS DVSPQWPGLP IGLKFDPSDI ELLEHLAAKC GVGDLKPHPF IDEFIPTLNE  900
DQGICYTHPQ NLPGKGPCPT YSSLLMVYKF DSEDHFHFFF AGVKKDGSSI HFFHQTINAY  960
ATGQRKRRRI QNRHSTIEEH VRWHKTGKTK PVIENGVRKG WKKIMVLYKR SNRAHKPEKS  1020
NWVMHQYHLG AEEVEVGGEY VVSKISCQQP KQTDKNDGVT RMEDSDNSMI RASPRTPKTM  1080
TRSPPRPWES MIYEDDIDEK VHQESKFAAE GSNLPIQGVE CEDHLEYPLW LAGESQAAVN  1140
SEMNCLDNSS LQVKNSVKDR VSYAVHDPGT MEMSAGNKDT CTCGISELEN LEFDTPPDVQ  1200
LSDLQFDSQE SISSWLDQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4lqp_A4e-53379750104461Serine/threonine-protein kinase CBK1
4lqq_A4e-53379750104461Serine/threonine-protein kinase CBK1
4lqq_D4e-53379750104461Serine/threonine-protein kinase CBK1
4lqs_A4e-53379750104461Serine/threonine-protein kinase CBK1
5ncl_A4e-53379750104461Serine/threonine-protein kinase CBK1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1964968RKRRR
2965969KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.1520.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO841736380.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5811091e-121JX581109.1 Gossypium hirsutum clone NBRI_GE13670 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695180.10.0PREDICTED: serine/threonine-protein kinase D6PK-like
RefseqXP_016695181.10.0PREDICTED: serine/threonine-protein kinase D6PK-like
TrEMBLA0A2P5Q6P30.0A0A2P5Q6P3_GOSBA; Uncharacterized protein
STRINGGorai.007G075400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.12e-78NAC domain containing protein 85