PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0809
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 301aa    MW: 33178.3 Da    PI: 6.969
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0809genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-18139193256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq  +Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Gh_D11G0809 139 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTK 193
                  788899***********************************************98 PP
2HD-ZIP_I/II126.21.4e-40139228191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l
  Gh_D11G0809 139 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVQELR-AL 228
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.2E-311108IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.4E-18114196IPR009057Homeodomain-like
SuperFamilySSF466895.56E-19122196IPR009057Homeodomain-like
PROSITE profilePS5007117.006135195IPR001356Homeobox domain
SMARTSM003893.6E-15137199IPR001356Homeobox domain
PfamPF000468.2E-16139193IPR001356Homeobox domain
CDDcd000868.16E-15139196No hitNo description
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
SMARTSM003401.6E-25195238IPR003106Leucine zipper, homeobox-associated
PfamPF021837.0E-12195229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGDKDDGLGL SLSLGCARNQ PSLKLNLMPL ASPCMQNLQQ RNIWNELFQS SVFVIDRMHA  60
DGQLETRSVA GGIDVNQAPA LAECEEEDGV SSPNSTVSSI GGKRNERDPV CDETEAERPS  120
CSRSSDDEDG GGAGDDASRK KLRLSKEQSL VLEETFKEHS TLNPKQKLAL AMQLNLRPRQ  180
VEVWFQNRRA RTKLKQTEVD CEYLKRCCDN LTEENRRLQK EVQELRALKL SPQLYTHINP  240
PTTLTMCPSC ERVAVASSSS SSLAASSAPN SKHQRPVPAS SWAALPLPVT HRPFNAPASR  300
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143SRKKLRL
2187195RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.234060.0boll
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709848.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1
SwissprotP466021e-101HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A1U8L8Z90.0A0A1U8L8Z9_GOSHI; homeobox-leucine zipper protein HAT3-like isoform X1
STRINGGorai.007G086600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-89homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]