PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G0862

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 116aa MW: 13541.8 Da PI: 9.673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G0862	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.9	7.4e-08	68	109	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P + +k K+ +L + ++Y++sLq Gh_D11G0862 68 KVRRKKISERMKYLQDLVPGC----NKITGKVGMLNEIINYVQSLQ 109 78*****************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.300	4.1E-8	20	64	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	8.58E-5	23	69	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00025	5.5E-13	23	69	IPR006689	Small GTPase superfamily, ARF/SAR type
PRINTS	PR00328	4.6E-15	31	55	IPR006689	Small GTPase superfamily, ARF/SAR type
PRINTS	PR00328	4.6E-15	58	83	IPR006689	Small GTPase superfamily, ARF/SAR type
SuperFamily	SSF47459	1.44E-12	58	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.195	58	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0019	64	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-12	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.40E-6	67	113	No hit	No description
Pfam	PF00010	2.4E-5	68	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005525	Molecular Function	GTP binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MSSTGDLDLQ IEQLMNCKPL SEEERLVQHQ PTQYPTLEEL SIGMIKFKAF DLGGHQIARR 60 VWKDYYAKVR RKKISERMKY LQDLVPGCNK ITGKVGMLNE IINYVQSLQR QVEVKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23145	1e-65	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in transport from the endoplasmic reticulum to the Golgi apparatus. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX585276	5e-64	JX585276.1 Gossypium hirsutum clone NBRI_GE18804 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016695394.1	3e-74	PREDICTED: transcription factor HBI1-like isoform X3
Swissprot	P52885	8e-26	SAR1_TOBAC; GTP-binding protein SAR1
TrEMBL	A0A1U8K457	7e-73	A0A1U8K457_GOSHI; transcription factor HBI1-like isoform X3
STRING	Gorai.001G223600.1	5e-59	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16325	3	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-23	cryptochrome-interacting basic-helix-loop-helix 1

Publications ? help Back to Top
Hanton SL, et al. Plant Sar1 isoforms with near-identical protein sequences exhibit different localisations and effects on secretion. Plant Mol. Biol., 2008. 67(3): p. 283-94 [PMID:18322804]