PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0887
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 338aa    MW: 35495.4 Da    PI: 9.539
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0887genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.77e-37671661103
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaks 97 
                  aa+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++    +   +  + s  +a+++   +
  Gh_D11G0887  67 AAPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTS--NANPEPGDP 160
                  689**************************************************************7777744421..1111111111..111111111 PP

          TCP  98 kksqks 103
                  +k++++
  Gh_D11G0887 161 SKKKHK 166
                  111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.4E-3073163IPR005333Transcription factor, TCP
PROSITE profilePS5136926.42174128IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAAIHKLEVE EDADPRAVVL SINGGGDVAP SKNPKEEPDI DTTLGAMPTA VHVPSGVPVP  60
PVTAAPAAPK RASTKDRHTK VEGRGRRIRI PATCAARIFQ LTRELGHKSD GETIRWLLEH  120
AEPAIIAATG TGTVPAIAMS VNGTLKIPTT SNANPEPGDP SKKKHKRPAN SEYVDINDAV  180
SVSSGLAPVV TPQQQQQQQA AVLPQGLVPI WAIPSNTVVP GAFFMVPPMA SMAGPSTQPH  240
IFTFPATATP VINISARPIS SFVSAMQAAT PSQLQNNVAV TSCTVPVSKA AKTTSVMAPS  300
SSSAASATTT TTTQMLRDFS LEIYDKQELQ FMTRSSKH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.28670.0embryo| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695435.10.0PREDICTED: transcription factor TCP9
SwissprotO646477e-96TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A1U8JYW80.0A0A1U8JYW8_GOSHI; transcription factor TCP9
STRINGGorai.007G094200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.15e-76TCP family protein