PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1071
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 400aa    MW: 45093.9 Da    PI: 8.7719
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1071genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31031.6e-32111215199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Gh_D11G1071 111 FDKVVTPSDVGKLNRLVIPKQHAEKYfplhSSTNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDTVSFQRGvGEsGKHRL 208
                  89***************************977778999*************************************************66577788889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Gh_D11G1071 209 YIDWRRR 215
                  9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-42105223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-30108215IPR015300DNA-binding pseudobarrel domain
CDDcd100173.05E-28109210No hitNo description
PROSITE profilePS5086315.03111216IPR003340B3 DNA binding domain
SMARTSM010191.6E-24111216IPR003340B3 DNA binding domain
PfamPF023629.5E-30111215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MNFVQDEDHE GNDDEVTREN TSNFPFSSSS SSATSNNKDT VAQQHQKHLW LGTLDSREDY  60
KVQVPAIKFD EKLGQMDLSL GNNNEYQSNI GSCIGGDSGS TIRCIEKEHM FDKVVTPSDV  120
GKLNRLVIPK QHAEKYFPLH SSTNEKGLLL NFEDRNGKSW RFRYSYWNSS QSYVMTKGWS  180
RFVKEKKLDA GDTVSFQRGV GESGKHRLYI DWRRRPNAPD PTTLAHIQLQ SQFNFPHSVR  240
WGSLYSMPQP MCVPRNYEPL HRLNYSIYPN THRQRQAITY GNAGQYYPRS SSGSHHHQIG  300
AVQAGGAEPM VIDSVPVVQG NKTVAKRLRL FGVNLECPNT TQAESSSSFP HGTIGSDDSP  360
HFSSFSRQST LSNNNTLRQS GMQAEYSKKG KSSLSIDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-651062183116B3 domain-containing transcription factor NGA1
5os9_B6e-651062183116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695850.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotQ6EU303e-80Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
SwissprotQ9MAN11e-80NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A1U8K0270.0A0A1U8K027_GOSHI; B3 domain-containing transcription factor NGA1-like
STRINGGorai.007G114200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.16e-83B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]