PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1074
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 451aa    MW: 51302.9 Da    PI: 4.7987
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1074genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.44.6e-39441743128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                   G+rFhPtd el+++yL +k  g++  + ++i+e+ di+ +ePw+Lp  ++v ++++ wyfF + + ky++++r nr+t++gyWk tgk +++++  +
  Gh_D11G1074  44 TGYRFHPTDFELLHYYLLNKNLGRDSLV-QAIAELeDICGLEPWQLPghSNVPSGDHVWYFFYRPSFKYQNSSRINRTTNEGYWKPTGKPRRIMAMdQ 140
                  7***********************9777.7788888***********5337778999*************************************9856 PP

          NAM  97 gelvglkktLvfykg..rapkgektdWvmheyrl 128
                  + ++g k+tLvfykg  ++++  kt W+mhey+l
  Gh_D11G1074 141 DIEIGKKRTLVFYKGhvSDNTKMKTGWIMHEYEL 174
                  677**********98445666779********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-4342192IPR003441NAC domain
PROSITE profilePS5100543.97542192IPR003441NAC domain
PfamPF023651.0E-2144174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MRNKKGYHII HRIPNEERFS SYYCYYLFWV AVGYYLWKKI LTITGYRFHP TDFELLHYYL  60
LNKNLGRDSL VQAIAELEDI CGLEPWQLPG HSNVPSGDHV WYFFYRPSFK YQNSSRINRT  120
TNEGYWKPTG KPRRIMAMDQ DIEIGKKRTL VFYKGHVSDN TKMKTGWIMH EYELTATLPN  180
QTTFVLCKLK RKFGKAEVSC IDEGQSSHYL PPNLGNYIAN NANQAEAARC LTANSNPNEM  240
LTQLEALNDH EELEHQYIEL WNSYVGGDFP KHDGSGDFGT HGAENAIANH HLLTEIPMGQ  300
EVLQDQSGTN EQDISNLGEL GPGDERSNQH KLIMDDDGCN MPSNSENDAA EDSVKMDLST  360
SARPSTDEEV FAGLEALPEA QGNRIEQMID DWNLDEGIPN AFDNQCSSSI EGQNPTPITG  420
GCNLSFEPDA LNLPRKRSRT DYCYEGFGFD T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-254519720170NO APICAL MERISTEM PROTEIN
1ut4_B7e-254519720170NO APICAL MERISTEM PROTEIN
1ut7_A7e-254519720170NO APICAL MERISTEM PROTEIN
1ut7_B7e-254519720170NO APICAL MERISTEM PROTEIN
3swm_A8e-254519723173NAC domain-containing protein 19
3swm_B8e-254519723173NAC domain-containing protein 19
3swm_C8e-254519723173NAC domain-containing protein 19
3swm_D8e-254519723173NAC domain-containing protein 19
3swp_A8e-254519723173NAC domain-containing protein 19
3swp_B8e-254519723173NAC domain-containing protein 19
3swp_C8e-254519723173NAC domain-containing protein 19
3swp_D8e-254519723173NAC domain-containing protein 19
4dul_A7e-254519720170NAC domain-containing protein 19
4dul_B7e-254519720170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.248280.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472480.0KC847248.1 Gossypium hirsutum NAC domain protein NAC71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313995.10.0NAC domain-containing protein 86-like
RefseqXP_012490211.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A1U8K0180.0A0A1U8K018_GOSHI; NAC domain-containing protein 86-like
STRINGGorai.007G114500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1973146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.15e-35NAC domain containing protein 45