PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1221
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 472aa    MW: 50994.1 Da    PI: 8.5388
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1221genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-114975127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++ + C +++rtG+C yG+rC+++H++
  Gh_D11G1221 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75
                 57899********************96 PP
2zf-CCCH39.59.3e-1394120127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+f+++tGtCk+G++CkF+H++
  Gh_D11G1221  94 PGEPTCQFYLKTGTCKFGASCKFHHPK 120
                  57899********************96 PP
3zf-CCCH27.74.6e-09141166227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG+Ck+  +CkF+H++
  Gh_D11G1221 141 GEKECSYYLKTGHCKFDTTCKFHHPQ 166
                  7899********************97 PP
4zf-CCCH36.58.2e-12294320127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++rtG Ck+G++C+++H++
  Gh_D11G1221 294 PGEPECQYYLRTGDCKFGSSCRYHHPR 320
                  5799*********************96 PP
5zf-CCCH19.41.9e-06343365426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   +C+f++++G+ k+G++CkF H+
  Gh_D11G1221 343 QPCSFYLQNGHYKFGSTCKFDHP 365
                  59********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3144876IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-74875IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-45474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.02393121IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-693120IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-697120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-499119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042139167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6141167IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6141166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817293321IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6293320IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6297323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4299320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.056339367IPR000571Zinc finger, CCCH-type
SMARTSM003560.4339366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MELYSRIPPR NGSQSGYQSE WSPAGPETGL EESMWQLSLG GTESYPERPG VPDCVYYMRT  60
GFCGYGNRCR YNHPRNPAWV EAAVRATGVY PERPGEPTCQ FYLKTGTCKF GASCKFHHPK  120
QGDQSFSQVP LNIYGYPLRP GEKECSYYLK TGHCKFDTTC KFHHPQPAGT SIPASAPQFY  180
LPVQSPSVPI TEQYGGTSTS ARPPILPGSY VQGTYGPVLF SPGVVPIPGW SHYSAPVSSV  240
LSPGVQPAVG ATSLYGLTQL SSSTPSHAGP YLSLPSSMSP SSGNQNNQTF PERPGEPECQ  300
YYLRTGDCKF GSSCRYHHPR DKVVPWTNCI LSPMGLPLRS GGQPCSFYLQ NGHYKFGSTC  360
KFDHPIGTMR YSPSVSSLID MPVAPYPVGS LLATLPPSST SSELRPGLSS GSKKDSYLSR  420
IPSSSTSSSS VGLIFSQTGS VPLSDLQHSS QSSVPLSSTR STRQGGEVHR SN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4451568e-54AM445156.2 Vitis vinifera contig VV78X067066.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694778.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1U8K1C50.0A0A1U8K1C5_GOSHI; zinc finger CCCH domain-containing protein 32-like
STRINGGorai.007G130500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein