PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G1506

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 413aa MW: 45936.4 Da PI: 6.6279

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G1506	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.2	5.8e-31	90	144	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+ Fv+av++LGG++kAtPktil+lm+++gL l+hvkSHLQk+Rl Gh_D11G1506 90 KPRLRWTYELHAYFVDAVNKLGGPQKATPKTILDLMDLDGLNLYHVKSHLQKFRL 144 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.121	87	147	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-27	88	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-22	90	145	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.7E-15	90	144	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MMENNVVNQN PGEFKRTEKG KEAVGGHEGD VNGDNQGDHH QIQGGGHNTL LALQETQGRS 60 IPVEINDDQV VNNEVVVKEK PILMVTNEIK PRLRWTYELH AYFVDAVNKL GGPQKATPKT 120 ILDLMDLDGL NLYHVKSHLQ KFRLGKFWVK EWQDTSKNVS QHQGGARSLR ALNSPSQNKE 180 PNRFNLLICL AGLRFLFSIV AYWHTLCRRA KAKRNRGPKK EPRGRLYMQL QATMILQAQK 240 HFLWYMESQR TNLNTALANQ HLGGAAAGNA FPYGQGQSSS GLGTFATMPG PSDFGTVAAS 300 PQFYVNQQNA CPPTYDAPTG QANPCLQEVP PSGHQPQTSL YPAPESLSTP NGYPASSHQE 360 TSPVLPGSET EDEDLIEALL NWDDNEPINL DASFNFDNLH GCINYNDLQD WLK

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MMENNVVNQN PGEFKRTEKG KEAVGGHEGD VNGDNQGDHH QIQGGGHNTL LALQETQGRS  60
IPVEINDDQV VNNEVVVKEK PILMVTNEIK PRLRWTYELH AYFVDAVNKL GGPQKATPKT  120
ILDLMDLDGL NLYHVKSHLQ KFRLGKFWVK EWQDTSKNVS QHQGGARSLR ALNSPSQNKE  180
PNRFNLLICL AGLRFLFSIV AYWHTLCRRA KAKRNRGPKK EPRGRLYMQL QATMILQAQK  240
HFLWYMESQR TNLNTALANQ HLGGAAAGNA FPYGQGQSSS GLGTFATMPG PSDFGTVAAS  300
PQFYVNQQNA CPPTYDAPTG QANPCLQEVP PSGHQPQTSL YPAPESLSTP NGYPASSHQE  360
TSPVLPGSET EDEDLIEALL NWDDNEPINL DASFNFDNLH GCINYNDLQD WLK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	90	147	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	90	147	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	90	147	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	90	147	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490983.1	1e-180	PREDICTED: myb family transcription factor APL-like isoform X1
TrEMBL	A0A0D2QTW8	0.0	A0A0D2QTW8_GOSRA; Uncharacterized protein
STRING	Gorai.007G163400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22091	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-28	G2-like family protein