PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1535
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 536aa    MW: 60179.1 Da    PI: 5.7448
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1535genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.24.9e-1401665361374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L+ cA+a+s++dl +aq+l+ +l+ + s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s++ l+++++++ev+P+lkf+++ a
  Gh_D11G1535 166 LKQVLVFCAKALSDNDLLMAQWLMDELRRMESVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPK---SADLLSYMHILYEVCPYLKFGYMSA 260
                  5799*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+A+ ++vpfef++ +a +  +++ e+L
  Gh_D11G1535 261 NGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLNIVGKRLSKLARYFKVPFEFHA-AAMSGCEVQREHL 357
                  ***************************************************998899999************************.89999******** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn++++lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F+ rfle+l+yy+a+f+s++++lpre++eri vE+++l+r
  Gh_D11G1535 358 QVRPGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFFPRFLETLNYYTAMFESIDVTLPREHKERIDVEQQCLAR 455
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++vn++acegaer+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g+l+lgW++r Lv+ +aW+
  Gh_D11G1535 456 DVVNIIACEGAERVERHELLGKWRSRFRMAGFTPYPLSSLVNATIKTLLENYCDR-YRLEERDGALYLGWMNRDLVASCAWK 536
                  *****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.094140517IPR005202Transcription factor GRAS
PfamPF035141.7E-137166536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MQASQQHRSS VMASRLYHQI KQEVEPEPYW FPQLPPTDPS LCYSDGFHFS VESSNENFCT  60
LESSSANGSY TAYNSTSLVG FSPNGSPMSQ QDSQSYPSDL HHSPDNNGGS PISGSCVTDD  120
VSDLRDKLKE LETVMLGPDS DVIDSKTSLE MGTWRLVTDA ISRGDLKQVL VFCAKALSDN  180
DLLMAQWLMD ELRRMESVSG EPIQRLGAYM LEGLVARLAS SGSSIYKALR CKEPKSADLL  240
SYMHILYEVC PYLKFGYMSA NGAIAEAMKD EDRVHIIDFQ IAQGSQWITL IQAFAARPGG  300
PPHIRITGID DSTSAYARGG GLNIVGKRLS KLARYFKVPF EFHAAAMSGC EVQREHLQVR  360
PGEALAVNFA FMLHHMPDES VSTENHRDRL LRLVKSLSPK VVTLVEQESN TNTAPFFPRF  420
LETLNYYTAM FESIDVTLPR EHKERIDVEQ QCLARDVVNI IACEGAERVE RHELLGKWRS  480
RFRMAGFTPY PLSSLVNATI KTLLENYCDR YRLEERDGAL YLGWMNRDLV ASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6317353526378Protein SCARECROW
5b3h_A1e-6317353525377Protein SCARECROW
5b3h_D1e-6317353525377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.165780.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016696343.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016696345.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016696346.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016696347.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016696348.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016696349.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016696350.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016696351.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1U8K6U60.0A0A1U8K6U6_GOSHI; scarecrow-like transcription factor PAT1
STRINGGorai.007G167000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]