PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G1879

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 215aa MW: 25159.4 Da PI: 6.5284

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G1879	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	62	116	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ ++A++lgL+ rqV vWFqNrRa++k+ Gh_D11G1879 62 KKRKLNQEQVTLLELNFGNEHKLESERKDRIASELGLDPRQVAVWFQNRRARWKN 116 45689************************************************95 PP
2	HD-ZIP_I/II	116.9	1.1e-37	62	153	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l++eqv+lLE +F +e+kLe+erK ++a+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +++++ +++rLe+ev +L+e+l+e Gh_D11G1879 62 KKRKLNQEQVTLLELNFGNEHKLESERKDRIASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKSLHETVVLDKCRLESEVVKLKEQLSE 153 9****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.5E-15	60	121	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-16	62	124	IPR009057	Homeodomain-like
Pfam	PF00046	2.3E-16	62	116	IPR001356	Homeobox domain
PROSITE profile	PS50071	15.92	62	117	IPR001356	Homeobox domain
CDD	cd00086	2.19E-14	62	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-19	64	124	IPR009057	Homeodomain-like
PRINTS	PR00031	3.3E-5	88	97	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	92	115	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.3E-5	97	113	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSQDYEMMTS QMNEHEDHIA LISQIYPGFY TQIATHQAGE PKPRRRRKKN KGGENSQWAV 60 AKKRKLNQEQ VTLLELNFGN EHKLESERKD RIASELGLDP RQVAVWFQNR RARWKNKKLE 120 EEYSKLKSLH ETVVLDKCRL ESEVVKLKEQ LSEAEKEIQQ LTERVDGVSS KSTSSSVLSM 180 EAIDPVFHGE FGYEDVFYIG ENNYVLGMEW MNLFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	64	RKKNKGGENSQWAVAKKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3578	1e-173	boll\| ovule

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	78347198	1e-173

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012491697.1	1e-145	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	6e-73	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A0D2TIR8	1e-144	A0A0D2TIR8_GOSRA; Uncharacterized protein
STRING	Gorai.007G206000.1	1e-145	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2208	26	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-56	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]