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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D11G1906 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | B3 | ||||||||
| Protein Properties | Length: 542aa MW: 61728.7 Da PI: 8.7911 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 51 | 2.7e-16 | 19 | 110 | 2 | 100 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
fkv +++ + g l +p kfa+++g+k s + +e ++g++We++l k +g+ + ++GW++F + L+ g f+vF+++++ +f +v +f++
Gh_D11G1906 19 FKVI-LESTIRDGKLGIPHKFAKDYGSK--LSSPVFFEVPNGEVWELEL--MKLDGKLWVQNGWRKFTEHYSLELGHFLVFRYQRNCRF--HVLIFDR 109
5555.356677788***********988..5557***************..********************************999999..*****98 PP
S CS
B3 100 s 100
s
Gh_D11G1906 110 S 110
5 PP
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| 2 | B3 | 49.6 | 7e-16 | 186 | 262 | 13 | 86 |
T...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 13 s...grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkldg 86
+ ++l++pk+f +++ +++ + +++l d+sg++W+ +++ + + l +GW Fv++n+L++gD++ F+l++
Gh_D11G1906 186 HskvSCLSIPKEFSRKYLMDH-G--DVILCDSSGNTWSAQYRAtlG----MngqpyVKLLNGWDAFVRDNNLQVGDVCAFELID 262
4445669**********6663.3..6***************66541....22245577889********************875 PP
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| 3 | B3 | 38.5 | 2e-12 | 333 | 415 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
f+ vl ps+v +++ l+++++f+++h + + +++ + l++++g+sW ++ + Fv++n+Lk+gD++vF+l+++++ +++v +f+
Gh_D11G1906 333 FVVVLRPSYVQSHA-LCISNDFTRKHFKTTLTNIGIALRHSNGKSWPAEY--------------HQAFVNDNKLKVGDVCVFELVSDTQISFKVIIFQ 415
67788888888887.***********888899999***************..............368*****************99988888888876 PP
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| 4 | B3 | 40.5 | 5.1e-13 | 454 | 536 | 9 | 95 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
+ k++++ +p +f+e++ +++ ++ l+l + r+W v+++ + + + lt+GW +F+++n L+egD++v +ld ++ l+v+
Gh_D11G1906 454 HL-KEDCVDIPFRFVEQYFEPNVQK--LIL-QVADRTWPVEITSNPRIRIAKLTSGWIKFARENSLREGDICVYELDTVNNNLLKVS 536
44.45559**********7675564..554.4477*******77777777*************************987666556665 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 2.55E-24 | 11 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.4E-23 | 12 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 13.676 | 17 | 110 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 7.29E-19 | 17 | 108 | No hit | No description |
| Pfam | PF02362 | 1.9E-13 | 18 | 109 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 3.4E-18 | 18 | 110 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 4.7E-20 | 166 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.9E-21 | 169 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 6.87E-19 | 172 | 274 | No hit | No description |
| SMART | SM01019 | 5.2E-9 | 174 | 274 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.296 | 177 | 276 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.2E-13 | 189 | 262 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 1.04E-16 | 326 | 415 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.7E-15 | 326 | 415 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.54E-13 | 331 | 414 | No hit | No description |
| Pfam | PF02362 | 2.9E-10 | 333 | 415 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 5.1E-8 | 333 | 417 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 6.569 | 385 | 417 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 2.3E-16 | 441 | 538 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.41E-13 | 444 | 535 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 3.19E-14 | 445 | 539 | No hit | No description |
| PROSITE profile | PS50863 | 11.956 | 445 | 541 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 7.4E-10 | 446 | 541 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.9E-10 | 454 | 536 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 542 aa Download sequence Send to blast |
MAYHHGRVDG YSPEPYHFFK VILESTIRDG KLGIPHKFAK DYGSKLSSPV FFEVPNGEVW 60 ELELMKLDGK LWVQNGWRKF TEHYSLELGH FLVFRYQRNC RFHVLIFDRS ASEIHYPYAN 120 NISTDMTKKP VLQCPRPPKI MRASNNGFSA TKGNEKSKAL ERASSAFKSG NPFFLVFMQP 180 TYVGLHSKVS CLSIPKEFSR KYLMDHGDVI LCDSSGNTWS AQYRATLGMN GQPYVKLLNG 240 WDAFVRDNNL QVGDVCAFEL IDCIDISFQV FIYSSKKADF HGSPAQMEAG ITLTRSECLE 300 PVKARETAFH REMKVREKAL QRALAFTSEN PFFVVVLRPS YVQSHALCIS NDFTRKHFKT 360 TLTNIGIALR HSNGKSWPAE YHQAFVNDNK LKVGDVCVFE LVSDTQISFK VIIFQAIADE 420 DSHPSQGASQ EALGLTSQSA KAPLIFRRVV LPLHLKEDCV DIPFRFVEQY FEPNVQKLIL 480 QVADRTWPVE ITSNPRIRIA KLTSGWIKFA RENSLREGDI CVYELDTVNN NLLKVSISKY 540 AS |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012491737.1 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
| Refseq | XP_012491738.1 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
| TrEMBL | A0A2P5SLU3 | 0.0 | A0A2P5SLU3_GOSBA; Uncharacterized protein | ||||
| STRING | Gorai.007G209200.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM18343 | 4 | 9 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18990.1 | 2e-24 | B3 family protein | ||||




