PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1906
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 542aa    MW: 61728.7 Da    PI: 8.7911
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1906genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.7e-16191102100
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  fkv   +++ + g l +p kfa+++g+k   s  + +e ++g++We++l   k +g+ + ++GW++F +   L+ g f+vF+++++ +f  +v +f++
  Gh_D11G1906  19 FKVI-LESTIRDGKLGIPHKFAKDYGSK--LSSPVFFEVPNGEVWELEL--MKLDGKLWVQNGWRKFTEHYSLELGHFLVFRYQRNCRF--HVLIFDR 109
                  5555.356677788***********988..5557***************..********************************999999..*****98 PP

                  S CS
           B3 100 s 100
                  s
  Gh_D11G1906 110 S 110
                  5 PP

2B349.67e-161862621386
                  T...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  13 s...grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkldg 86 
                  +   ++l++pk+f +++ +++ +  +++l d+sg++W+ +++        +     + l +GW  Fv++n+L++gD++ F+l++
  Gh_D11G1906 186 HskvSCLSIPKEFSRKYLMDH-G--DVILCDSSGNTWSAQYRAtlG----MngqpyVKLLNGWDAFVRDNNLQVGDVCAFELID 262
                  4445669**********6663.3..6***************66541....22245577889********************875 PP

3B338.52e-12333415198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+ vl ps+v +++ l+++++f+++h + + +++ + l++++g+sW  ++               + Fv++n+Lk+gD++vF+l+++++ +++v +f+
  Gh_D11G1906 333 FVVVLRPSYVQSHA-LCISNDFTRKHFKTTLTNIGIALRHSNGKSWPAEY--------------HQAFVNDNKLKVGDVCVFELVSDTQISFKVIIFQ 415
                  67788888888887.***********888899999***************..............368*****************99988888888876 PP

4B340.55.1e-13454536995
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  +  k++++ +p +f+e++ +++ ++  l+l +   r+W v+++ + + +   lt+GW +F+++n L+egD++v +ld  ++  l+v+
  Gh_D11G1906 454 HL-KEDCVDIPFRFVEQYFEPNVQK--LIL-QVADRTWPVEITSNPRIRIAKLTSGWIKFARENSLREGDICVYELDTVNNNLLKVS 536
                  44.45559**********7675564..554.4477*******77777777*************************987666556665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2411110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-2312110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.67617110IPR003340B3 DNA binding domain
CDDcd100177.29E-1917108No hitNo description
PfamPF023621.9E-1318109IPR003340B3 DNA binding domain
SMARTSM010193.4E-1818110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-20166275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-21169275IPR015300DNA-binding pseudobarrel domain
CDDcd100176.87E-19172274No hitNo description
SMARTSM010195.2E-9174274IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296177276IPR003340B3 DNA binding domain
PfamPF023621.2E-13189262IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-16326415IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-15326415IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-13331414No hitNo description
PfamPF023622.9E-10333415IPR003340B3 DNA binding domain
SMARTSM010195.1E-8333417IPR003340B3 DNA binding domain
PROSITE profilePS508636.569385417IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-16441538IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-13444535IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-14445539No hitNo description
PROSITE profilePS5086311.956445541IPR003340B3 DNA binding domain
SMARTSM010197.4E-10446541IPR003340B3 DNA binding domain
PfamPF023621.9E-10454536IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAYHHGRVDG YSPEPYHFFK VILESTIRDG KLGIPHKFAK DYGSKLSSPV FFEVPNGEVW  60
ELELMKLDGK LWVQNGWRKF TEHYSLELGH FLVFRYQRNC RFHVLIFDRS ASEIHYPYAN  120
NISTDMTKKP VLQCPRPPKI MRASNNGFSA TKGNEKSKAL ERASSAFKSG NPFFLVFMQP  180
TYVGLHSKVS CLSIPKEFSR KYLMDHGDVI LCDSSGNTWS AQYRATLGMN GQPYVKLLNG  240
WDAFVRDNNL QVGDVCAFEL IDCIDISFQV FIYSSKKADF HGSPAQMEAG ITLTRSECLE  300
PVKARETAFH REMKVREKAL QRALAFTSEN PFFVVVLRPS YVQSHALCIS NDFTRKHFKT  360
TLTNIGIALR HSNGKSWPAE YHQAFVNDNK LKVGDVCVFE LVSDTQISFK VIIFQAIADE  420
DSHPSQGASQ EALGLTSQSA KAPLIFRRVV LPLHLKEDCV DIPFRFVEQY FEPNVQKLIL  480
QVADRTWPVE ITSNPRIRIA KLTSGWIKFA RENSLREGDI CVYELDTVNN NLLKVSISKY  540
AS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491737.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_012491738.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A2P5SLU30.0A0A2P5SLU3_GOSBA; Uncharacterized protein
STRINGGorai.007G209200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-24B3 family protein