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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D11G1990 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 370aa MW: 42226.6 Da PI: 5.4727 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 75.6 | 3.9e-24 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
k+ien + r++tf+kR+ g+ KKA+ELS+LCd+eva+iifs+ gkl+ +
Gh_D11G1990 9 KKIENRTYRHITFAKRKSGLVKKAYELSTLCDIEVALIIFSPAGKLFLF 57
68*******************************************9865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 27.235 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.5E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.32E-26 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.4E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 370 aa Download sequence Send to blast |
MGRVKLELKK IENRTYRHIT FAKRKSGLVK KAYELSTLCD IEVALIIFSP AGKLFLFDGK 60 KRIEEILAEY MELPARRRGW YGFLMEVLRL CVCVLFQLIR RIVTQLNVEA SFYGVIRRDK 120 DSENLLKEIQ NGIVVCSTEL EQVERNLQFF LKNPSSLDTI TEVMYHEMIL EETLELVHEI 180 LIMCVSFLIL QRVLEANEFV GPTRMEFGVD IVPNLVDPSE IPLHAQNASA QACLERGLNY 240 NFMNWPSLND VQAPTNFTDQ SIGLQQPLRN LAEPLVERLP FPMRLPSPMR SHHLQGHGHL 300 GGNEVSTQPN MNFDDYVYRP APPIVNANFP PMNMDTMPQA APRGSEAEAE AENWRSGNSS 360 NSDSSLWFLG |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6byy_A | 3e-15 | 1 | 72 | 1 | 71 | MEF2 CHIMERA |
| 6byy_B | 3e-15 | 1 | 72 | 1 | 71 | MEF2 CHIMERA |
| 6byy_C | 3e-15 | 1 | 72 | 1 | 71 | MEF2 CHIMERA |
| 6byy_D | 3e-15 | 1 | 72 | 1 | 71 | MEF2 CHIMERA |
| 6c9l_A | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HM236446 | 1e-173 | HM236446.1 Gossypium hirsutum MADS30 mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012491910.1 | 0.0 | PREDICTED: MADS-box transcription factor 7-like | ||||
| TrEMBL | A0A0D2SPF2 | 0.0 | A0A0D2SPF2_GOSRA; Uncharacterized protein | ||||
| STRING | Gorai.007G219600.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM17254 | 9 | 10 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G22130.1 | 2e-30 | AGAMOUS-like 104 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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