PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G2127

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 254aa MW: 28642 Da PI: 7.1616

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G2127	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.3	3.7e-33	51	105	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rY+eClkNhA+ +GghavDGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e Gh_D11G2127 51 KPRYRECLKNHAVGIGGHAVDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKETE 105 779***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.7E-30	53	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.7E-30	53	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-23	53	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.453	54	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.14E-18	163	234	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-31	163	235	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.4E-25	176	233	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEFEDQEEQE EEMGLAPSYD PLANSSRVKM SGVEPGSITP TGQQQQQQQR KPRYRECLKN 60 HAVGIGGHAV DGCGEFMPAG TEGTLDALKC AACNCHRNFH RKETELGSPH SVPMTDLYFH 120 HPHHQPPQFT PYFRPPTGFL HMAGQQRPLA LPSISGGVGG HSREDQDDVS NQGSSRKRFR 180 TKFTQEQKEK MLALAERLGW RIQKQDEAIV QQFCNETGVK RHVFKVWMHN NKNTLDNGAL 240 RQSGDMQCNT MQEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-27	177	234	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19878	0.0	boll\| ovule\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016683406.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
Refseq	XP_016699630.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
Refseq	XP_017627154.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	A2Z259	3e-77	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	3e-77	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1U8IZA3	0.0	A0A1U8IZA3_GOSHI; zinc-finger homeodomain protein 2-like
STRING	Gorai.007G233800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	8e-70	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]