PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G2225

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 423aa MW: 47662.1 Da PI: 5.3639

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G2225	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.5	5e-12	136	175	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 +k +rr+++NReAAr+sR+RKka++++Le+ +L + + Gh_D11G2225 136 DKIQRRLAQNREAARKSRLRKKAYVQQLENSRLKLIQLEQ 175 689**************************96666655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.3E-8	132	179	No hit	No description
SMART	SM00338	4.4E-9	133	196	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.875	135	179	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.84E-8	137	179	No hit	No description
CDD	cd14708	4.69E-21	137	189	No hit	No description
Pfam	PF00170	3.1E-8	137	167	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	140	155	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.7E-29	223	298	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MATQHLDDNI CREEEGIEAI ETWNVGEQQE LEGDEESKLS IALDINSTCA KVAFVIISKS 60 MNSPTPQFVP SRLSIYEPIH QIGIWGENFK RNGNPNTSTS LIVEVDNKLE NESETTSHEM 120 LAPTNNYEQE ASKPIDKIQR RLAQNREAAR KSRLRKKAYV QQLENSRLKL IQLEQELQRV 180 TQQGLYMGGV LEGSHIGFSG TVNSGIAAFE MEYGRWVDVQ HRQICELRTA LNAHISDIEL 240 RILVKSGMGH YFELFRMKST VAKADVFYVI SGVWKTSAER FFSWIGGFRP SELLKVLVPQ 300 LDPLTEQQIL EVCNLKQSCQ QAEDALSQGM EKLQETVSST VAGGPVAEDS YIPQVATAME 360 KLEALVSFVN QADHLRQETL QQMSRILTTR QAARGLLALG EYFHRLRALS TLWATRPPEP 420 SLP

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MATQHLDDNI CREEEGIEAI ETWNVGEQQE LEGDEESKLS IALDINSTCA KVAFVIISKS  60
MNSPTPQFVP SRLSIYEPIH QIGIWGENFK RNGNPNTSTS LIVEVDNKLE NESETTSHEM  120
LAPTNNYEQE ASKPIDKIQR RLAQNREAAR KSRLRKKAYV QQLENSRLKL IQLEQELQRV  180
TQQGLYMGGV LEGSHIGFSG TVNSGIAAFE MEYGRWVDVQ HRQICELRTA LNAHISDIEL  240
RILVKSGMGH YFELFRMKST VAKADVFYVI SGVWKTSAER FFSWIGGFRP SELLKVLVPQ  300
LDPLTEQQIL EVCNLKQSCQ QAEDALSQGM EKLQETVSST VAGGPVAEDS YIPQVATAME  360
KLEALVSFVN QADHLRQETL QQMSRILTTR QAARGLLALG EYFHRLRALS TLWATRPPEP  420
SLP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492248.1	0.0	PREDICTED: transcription factor TGA1-like isoform X2
Swissprot	Q39237	0.0	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A1U8NTF9	0.0	A0A1U8NTF9_GOSHI; transcription factor TGA1-like isoform X2
STRING	Gorai.007G243200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]