PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2246
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 155aa    MW: 18241.6 Da    PI: 10.0174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2246genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-3277135159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Gh_D11G2246  77 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 135
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-3462135IPR003657WRKY domain
SuperFamilySSF1182905.1E-2969136IPR003657WRKY domain
PROSITE profilePS5081129.34472137IPR003657WRKY domain
SMARTSM007749.8E-3777136IPR003657WRKY domain
PfamPF031061.6E-2578134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
HREHLASDFG GPRLLSLQRS SANFWAWGEL NECLGSKKNG VDDHLGVSAM KMKRIKARRK  60
VREPRFCFKT MSEVDVLDDG YKWRKYGQKV VKNTQHPRSY YRCTQDNCRV KKRVERLAED  120
PRMVITTYEG RHVHSPSHDL DDSQPTDSQL NNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-2868134874Probable WRKY transcription factor 4
2lex_A7e-2868134874Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.168540.0boll
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698430.0KF669843.1 Gossypium hirsutum WRKY transcription factor 116 (WRKY116) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492319.11e-114PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB75e-61WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A1U8L0181e-113A0A1U8L018_GOSHI; probable WRKY transcription factor 13
STRINGGorai.007G246500.11e-113(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.16e-54WRKY DNA-binding protein 13