PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2267
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 925aa    MW: 102765 Da    PI: 7.7254
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2267genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-09177198325
                  S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                  t lC++f++ G C++G++C+F H
  Gh_D11G2267 177 TQLCKDFMA-GRCRRGSQCHFLH 198
                  78*******.************* PP
2zf-CCCH21.44.5e-07240259626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C ++++ G C++G++C+FaH+
  Gh_D11G2267 240 CTDYLK-GNCRRGASCRFAHD 259
                  9*****.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-5174200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009174201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5176199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-8177199IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6177198IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-4234260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906234261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5237259IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-5240259IPR000571Zinc finger, CCCH-type
SMARTSM003560.28298324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981298325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5301323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MSGSRKRGSK WNSKEEQQYS LENVRDKGWS AKGSAPFHDR ESEHGYFSAE VGRKDKWSVV  60
GVSDMMKSKH GMPSRESLHG SRVGEKDDNN DFVKNWKTST PWDGDETYSM KMSPGLDDWR  120
LKKRHSSPKG DWNGSHRSRS RSWSRSRSIS RSRSPVRSVR WQSGLHERTR NRSGVSTQLC  180
KDFMAGRCRR GSQCHFLHQD IQSREDGWDN RQKRAGVSKY ITHDDCKDYL VKSGRSTDCC  240
TDYLKGNCRR GASCRFAHDG ATDGFSRRTT NEISSERENT KRNRIRTPDR DGEREARRSS  300
DIPCKFFASG NCHNGKYCRF SHHGQARASP DRRSRGDRGV WCPSSINVDR LQDGPTLRDT  360
DASFNVNKSW NAPERSDANV INEAEIPWTG PKWSDLDASN DANNSWTGSK WSDAEASNDA  420
NNSWTGSKWS DTGAYLGATK FSKDTIGKKG ASEPRFSNWS MDEKWQHNYD VSGKNIEADV  480
QYKKVDIDKD EQTPRKIENS GVNIGVSEPK GAEESLGDME MSPEWNYKIQ SSIKKELSHG  540
SKPALVETLL HSQERNITKA ASDQVHDGLA ALPMLTEKSN VHQDHLMRCS SGVALPCVSN  600
ALNTGSNSHI VLNFSINNTP LPSFDQPGPS PSTLPCSNIN AVGQSQVTIP SNEVTMEDAQ  660
NGLLFQEEKR SNELNIGDAN VLHGNSGSKS TQTMVSNEQL TQLTNLSASL AQLFGKGQQL  720
PLLHAALNAH NGMQVTSIAN SGGHIEPDSM PNLQPDQDIT FPKQYDPISD SIEPAKKQGT  780
DTKPLGFSIQ PVAEKNTDGQ SELSAYKLLP SSLLCSNNDD DYHNDLSSKR EPDFDSHKPN  840
QLEPVASSEA KKKNEGVEET KKAEGENGPS ESGDADDKTD EAKKNKDSKG IRAFKFALVE  900
FVKDLLKPTW KEGQIGKEXG VGGRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.187870.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697730.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X2
RefseqXP_016697731.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X2
TrEMBLA0A1U8K5E40.0A0A1U8K5E4_GOSHI; zinc finger CCCH domain-containing protein 38-like isoform X2
STRINGGorai.003G068000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15764912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.17e-06C3H family protein