PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G2349

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 472aa MW: 50850.2 Da PI: 7.0186

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G2349	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	86	145	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Gh_D11G2349 86 PDKILPCPRCNSFDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 145 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	79	143	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-31	88	144	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	90	144	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	92	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MKGGDPAFKL FGREIPMPQS QIHAGDSTIV EIETSQANTC QSITVENDTE ECRTSLKSNG 60 IRMNCIVKDE QVETNGTDQE KVFKKPDKIL PCPRCNSFDT KFCYFNNYNV NQPRHFCKNC 120 QRYWTAGGTM RNVPIGAGRR KNKHLASQYR QIIIASSGGV PVTRIETPDS TTQQLLSPGE 180 TTTAMGNGTV LKFGTEAPLC ESMETVLSLG DQKRCVETST VSSGEIREEP SLCGSSMTPC 240 GMPGNVMQKE RIGSAGPNEL NTKHPTQCYP VSPCIFPWNT GLSNVASMAT GQGSSEHIGA 300 PNGTTSNTVQ WCPAPMVAVP GFCPSNIQLQ FVPAYWGCIP LWAPGGGNVS ISNSSGCLSP 360 SSSTSNSCGS GNGLLTLGKH YREANVVEEE QSEKCILVPK TLRIDNPNEA SRSPIWATLG 420 IKPGQKDPLR GGKIFNAFES KAEGKDHVSD GSYILEANPA ALSRSQTFQE ST

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MKGGDPAFKL FGREIPMPQS QIHAGDSTIV EIETSQANTC QSITVENDTE ECRTSLKSNG  60
IRMNCIVKDE QVETNGTDQE KVFKKPDKIL PCPRCNSFDT KFCYFNNYNV NQPRHFCKNC  120
QRYWTAGGTM RNVPIGAGRR KNKHLASQYR QIIIASSGGV PVTRIETPDS TTQQLLSPGE  180
TTTAMGNGTV LKFGTEAPLC ESMETVLSLG DQKRCVETST VSSGEIREEP SLCGSSMTPC  240
GMPGNVMQKE RIGSAGPNEL NTKHPTQCYP VSPCIFPWNT GLSNVASMAT GQGSSEHIGA  300
PNGTTSNTVQ WCPAPMVAVP GFCPSNIQLQ FVPAYWGCIP LWAPGGGNVS ISNSSGCLSP  360
SSSTSNSCGS GNGLLTLGKH YREANVVEEE QSEKCILVPK TLRIDNPNEA SRSPIWATLG  420
IKPGQKDPLR GGKIFNAFES KAEGKDHVSD GSYILEANPA ALSRSQTFQE ST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492438.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A0D2SR12	0.0	A0A0D2SR12_GOSRA; Uncharacterized protein
STRING	Gorai.007G253500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15591	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-63	cycling DOF factor 2