PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2467
Common NameNAC8
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 349aa    MW: 39495.4 Da    PI: 7.1887
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2467genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM184.62.3e-57171441129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdee++++yL++kv ++++++ ++i evd++k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ kg 
  Gh_D11G2467  17 LPPGFRFHPTDEEIITHYLTEKVMNSNFSA-SAIGEVDLNKCEPWDLPKKAKMGEKQWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIFKGKGC 113
                  79**************************99.88***************99999*****************************************9*** PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                  lvg+kktLvfykgrapkgek++Wvmheyrle
  Gh_D11G2467 114 LVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 144
                  *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6315168IPR003441NAC domain
PROSITE profilePS5100559.99917168IPR003441NAC domain
PfamPF023657.9E-3018143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEAIVVNKG DDELIDLPPG FRFHPTDEEI ITHYLTEKVM NSNFSASAIG EVDLNKCEPW  60
DLPKKAKMGE KQWYFFCQRD RKYPTGMRTN RATEAGYWKA TGKDKEIFKG KGCLVGMKKT  120
LVFYKGRAPK GEKSNWVMHE YRLEGKFSYY NLPKGAKDEW VVCRVFDKNN TGTKKSPIPD  180
HHQLLRMNSY GDDFMDYASL PPLMDPTYNS NKPGSSCTFM DGGDNEFKAA INNQTFLQVP  240
PNHPYGSSNI FNPQIPIQNP IVFHQATPTS TYLHQGRTTA GTGFAGNDPA NRQCKVEQFS  300
SNQSMVSLSQ DTGLSTEINN NEISSVVSKN DMGFGISKSF EDLRCLWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-541517415171NO APICAL MERISTEM PROTEIN
1ut4_B5e-541517415171NO APICAL MERISTEM PROTEIN
1ut7_A5e-541517415171NO APICAL MERISTEM PROTEIN
1ut7_B5e-541517415171NO APICAL MERISTEM PROTEIN
3swm_A5e-541517418174NAC domain-containing protein 19
3swm_B5e-541517418174NAC domain-containing protein 19
3swm_C5e-541517418174NAC domain-containing protein 19
3swm_D5e-541517418174NAC domain-containing protein 19
3swp_A5e-541517418174NAC domain-containing protein 19
3swp_B5e-541517418174NAC domain-containing protein 19
3swp_C5e-541517418174NAC domain-containing protein 19
3swp_D5e-541517418174NAC domain-containing protein 19
4dul_A5e-541517415171NAC domain-containing protein 19
4dul_B5e-541517415171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.74680.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO841697650.0
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141390.0JQ914139.1 Gossypium hirsutum NAC domain protein 8 (NAC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314645.10.0NAC domain-containing protein 92-like
RefseqXP_012492652.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FK441e-124NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A2P5S4P70.0A0A2P5S4P7_GOSBA; Uncharacterized protein
STRINGGorai.007G267700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-126Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Shah ST, et al.
    Isolation and expression profiling of GhNAC transcription factor genes in cotton (Gossypium hirsutum L.) during leaf senescence and in response to stresses.
    Gene, 2013. 531(2): p. 220-34
    [PMID:24036432]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]