PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G2469

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 357aa MW: 40096.1 Da PI: 8.1852

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G2469	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.3	3.1e-53	8	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk ++++ Gh_D11G2469 8 LPPGFRFHPTDEELILHYLKKKITSSPFPV-SIIADVDIYKFDPWDLPDKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKVIVTSsma 104 79**************************.89***********888889***********************************98787 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e++g+kk Lvfykgr pkg kt+W+mheyrl Gh_D11G2469 105 drrgeVQENIGVKKALVFYKGRPPKGMKTNWIMHEYRL 142 776554555*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-64	4	175	IPR003441	NAC domain
PROSITE profile	PS51005	61.547	8	175	IPR003441	NAC domain
Pfam	PF02365	5.2E-28	9	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MKHPQSSLPP GFRFHPTDEE LILHYLKKKI TSSPFPVSII ADVDIYKFDP WDLPDKAAFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKVIVT SSMADRRGEV QENIGVKKAL 120 VFYKGRPPKG MKTNWIMHEY RLADNPNSNF NNRPLKSKDS SMRLDDWVLC RIYKKSNALS 180 STTAIGAATS DQDLEEEEAE QFIKDALLPA AIKSPPTTNA LLPQKSCSFS NLLDAMDYSM 240 LSSFLADNQC NGSGYDPTSF TCEQPLVNNY TIGNNSSSSS SMMVQKLPQL SPSVPNMENK 300 LKRQYSSIDE DHPSKKLNSS CSYSNSSSQS DMTHYTFLNQ SLFNQSLLLS PHVQFQG

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MKHPQSSLPP GFRFHPTDEE LILHYLKKKI TSSPFPVSII ADVDIYKFDP WDLPDKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKVIVT SSMADRRGEV QENIGVKKAL  120
VFYKGRPPKG MKTNWIMHEY RLADNPNSNF NNRPLKSKDS SMRLDDWVLC RIYKKSNALS  180
STTAIGAATS DQDLEEEEAE QFIKDALLPA AIKSPPTTNA LLPQKSCSFS NLLDAMDYSM  240
LSSFLADNQC NGSGYDPTSF TCEQPLVNNY TIGNNSSSSS SMMVQKLPQL SPSVPNMENK  300
LKRQYSSIDE DHPSKKLNSS CSYSNSSSQS DMTHYTFLNQ SLFNQSLLLS PHVQFQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-73	5	178	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-73	5	178	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-73	5	178	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-73	5	178	14	168	NO APICAL MERISTEM PROTEIN
4dul_A	2e-73	5	178	14	168	NAC domain-containing protein 19
4dul_B	2e-73	5	178	14	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.6538	0.0	boll\| embryo\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU706343	0.0	EU706343.1 Gossypium hirsutum NAC domain protein NAC5 (NAC5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016753551.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q84TD6	1e-119	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A1U8PQX4	0.0	A0A1U8PQX4_GOSHI; NAC transcription factor 29-like
STRING	Gorai.007G267900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7723	25	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-111	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]