PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2533
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 433aa    MW: 47804.4 Da    PI: 5.9686
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2533genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.53.5e-34210264155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr+rWtpeLHe+F+eav+qLGGse+AtPk il+lm+v+gLt++hvkSHLQkYR+
  Gh_D11G2533 210 KPRMRWTPELHEAFLEAVNQLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRT 264
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.615207267IPR017930Myb domain
SuperFamilySSF466891.88E-19208264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-31209265IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-25210264IPR006447Myb domain, plants
PfamPF002499.9E-11212263IPR001005SANT/Myb domain
PfamPF143792.1E-23297341IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLAMCFFPVS SGREVMENSV SLQESSLAPS NGTLGNSSLS PSIVTDHMCA SALPHVQHSH  60
NPAFISQSSR DLASLPPLDA SFSQSTASLI HTQGNKDVSW SLDRLQMFLD LPENTPAPNQ  120
LVESSTGVLA SEDHNKKTNW QEWADDLINV VDPDWSKILD NTNVLNPRVE VPKPSGDISK  180
QQPQFHQNQL VPHGEFSSHA YPSSTAPPTK PRMRWTPELH EAFLEAVNQL GGSERATPKG  240
ILKLMNVEGL TIYHVKSHLQ KYRTARYMPE TSEGTSEKRI TSIEEMKSID LKTSIGITEA  300
LRLQVEVQKQ LHEQLEIQRN LQLRIEEQGR YLQMMFEKQK KVEDEKGGVP SSASDDLLAP  360
LPGSKHPPCN NGKSDSEALE QDHSRTGIGP GNAGTNEDKS SSGVSTKLKM LETESTVHDE  420
SGFSVSKRAR TEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-30210267259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-30210267259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-30210267259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-30210267259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-30210267259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-30210267259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-30210267259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-30210267259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.65760.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016715505.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X3
SwissprotQ8GUN59e-94PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A1U8LLX60.0A0A1U8LLX6_GOSHI; protein PHR1-LIKE 1-like isoform X3
STRINGGorai.007G274700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.24e-96G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]