PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2611
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 701aa    MW: 77089 Da    PI: 6.9288
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2611genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.82.9e-15417455240
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+CnCk+skClk+YC+Cfaag +C e C+C dC+Nk 
  Gh_D11G2611 417 SCKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCLDCFNKP 455
                  689**********************************96 PP
2TCR53.45e-17502541140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+gCnC+ks+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ 
  Gh_D11G2611 502 RHKRGCNCRKSSCLKKYCECFQAGVGCSPSCRCEGCKNSF 541
                  589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-18416457IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.427417542IPR005172CRC domain
PfamPF036386.6E-11419454IPR005172CRC domain
SMARTSM011143.8E-17502543IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12504540IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MDTPHKTQIT PTPISSLSKF EDSPVFKYID SLSPIEQAKS SQTDNCFNSL AFLSPSSLFP  60
SPQINCHRES RFSVKRHYFS ADLNTRVLQS SNESNAGQEA SKAVEQSGLY DEHPGCLSND  120
SSSKGISSDL FDKQSDLAVE LPGTSNYDCR SPEDNLEACD ALMKKTSLEV VEQERSPFQR  180
SRDEWKERQR SFENERDLRK IRRIKPSEEA AGCGWVAVVS DVADMLTVNT SIIHENSDGQ  240
DQRTVDSGTT SFISNIPEFS LDNANNLEHA ESGDHQGSCK QNELGESVTD QISCILSTCL  300
PDKPVVTDSS LKKDDKGEKC SQLSRQRSIR RRCLVFEKSP GFGLHLNSLP NILKGGQNPP  360
NKSILSSMKM GEVPSDNGTA VAENSSEAPA SVGGTDADHN TPEKKRQKFE LVEESASCKR  420
CNCKRSKCLK LYCDCFAAGL YCIEPCSCLD CFNKPIHEKM VLETRKQIES RNPQAFAPKV  480
IRSTESVLDS WGENNKTPAS ARHKRGCNCR KSSCLKKYCE CFQAGVGCSP SCRCEGCKNS  540
FGRKDGCDES GSDGEGLEAC EKNASDKNSH DIVTHKNAEE HQDLPVASNI SRLPLAYSGK  600
FTGSFPLSIR SSSQLCNTPE HGSSESSLCQ SKFNSNLQAI PEDETPKVLK HKCLPLVPKT  660
NSPPNSKRVS PPHHDCSSST AQRSRKLILK SIPSFPSFCP P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1841953912120Protein lin-54 homolog
5fd3_B1e-1841953912120Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713154.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A1U8LIY80.0A0A1U8LIY8_GOSHI; protein tesmin/TSO1-like CXC 2 isoform X1
STRINGGorai.007G284200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17096510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-69TESMIN/TSO1-like CXC 2