PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G2625

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 422aa MW: 46316.1 Da PI: 4.3655

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G2625	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	109.2	2.8e-34	128	231	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk........spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 lfqrlw++eDei lLqG++d+++ + + + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgke+sf+++hdq +fe+ Gh_D11G2625 128 LFQRLWTDEDEIELLQGFLDYTMLKTSsnpsstshHHHQDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVISKISSGKEFSFKSPHDQATFEI 225 79*****************876655455555445678******************************************************* PP DUF573 92 skkiWg 97 s++iW+ Gh_D11G2625 226 SRRIWN 231 ***7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.0E-32	129	231	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MASEQYGAVF EVSQDDDDEP SSSDNEINEN DDVLNGNEDV LNDEEDEVLL EEEEDINSPS 60 LLPQPIPSQV SFASVPAVPL AVPSAAAVTI AAISTDELPP DSKSQRVDSV VAEKKTPPPQ 120 QLDDSRRLFQ RLWTDEDEIE LLQGFLDYTM LKTSSNPSST SHHHHQDTAL FYDQIKSKLQ 180 LDFNKNQLVE KLRRLKKKYR NVISKISSGK EFSFKSPHDQ ATFEISRRIW NDGVSKVEDN 240 VLDDDENNNN NNASLIDESG EKKNLTQKPA ATKKRSRNKG VKMEEKRDVN DGIVHIDSNS 300 NDRVNNDNGN VEALGGGSSG GGANTGAAGV IEETVRSCVT PLFKELLGSV LGGGGGYGGR 360 GISGLVMNAI PLCLGGGGGN GEWMDERWRK LQIMELEVYS KRVELVQDEI KAALEELRSM 420 NG

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MASEQYGAVF EVSQDDDDEP SSSDNEINEN DDVLNGNEDV LNDEEDEVLL EEEEDINSPS  60
LLPQPIPSQV SFASVPAVPL AVPSAAAVTI AAISTDELPP DSKSQRVDSV VAEKKTPPPQ  120
QLDDSRRLFQ RLWTDEDEIE LLQGFLDYTM LKTSSNPSST SHHHHQDTAL FYDQIKSKLQ  180
LDFNKNQLVE KLRRLKKKYR NVISKISSGK EFSFKSPHDQ ATFEISRRIW NDGVSKVEDN  240
VLDDDENNNN NNASLIDESG EKKNLTQKPA ATKKRSRNKG VKMEEKRDVN DGIVHIDSNS  300
NDRVNNDNGN VEALGGGSSG GGANTGAAGV IEETVRSCVT PLFKELLGSV LGGGGGYGGR  360
GISGLVMNAI PLCLGGGGGN GEWMDERWRK LQIMELEVYS KRVELVQDEI KAALEELRSM  420
NG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735629.1	0.0	PREDICTED: mediator-associated protein 1-like
TrEMBL	A0A1U8NCR0	0.0	A0A1U8NCR0_GOSHI; mediator-associated protein 1-like
STRING	Gorai.007G285700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	3e-61	DNA-binding storekeeper protein-related transcriptional regulator