PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2639
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 150aa    MW: 17360.9 Da    PI: 9.3028
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2639genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.6e-1961114356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ +q+++Le+ F   +++  e++ +LAk+lgL+ rqV +WFqNrRa +k
  Gh_D11G2639  61 KKRRLSMHQVKALEKNFDVGNKLEPERKVKLAKELGLQPRQVAIWFQNRRAHWK 114
                  56689************************************************9 PP
2HD-ZIP_I/II123.69.7e-4060146187
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                  ekkrrls +qvk+LE++F+  +kLeperKv+la+eLglqprqva+WFqnrRA +ktk lEkdy++Lk++ydalk ++++Leke+  L
  Gh_D11G2639  60 EKKRRLSMHQVKALEKNFDVGNKLEPERKVKLAKELGLQPRQVAIWFQNRRAHWKTKVLEKDYAMLKANYDALKLDHDNLEKEKLGL 146
                  69*********************************************************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-1848116IPR009057Homeodomain-like
PROSITE profilePS5007116.77956116IPR001356Homeobox domain
SMARTSM003894.1E-1759120IPR001356Homeobox domain
CDDcd000865.37E-1561116No hitNo description
PfamPF000464.7E-1661114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-1963123IPR009057Homeodomain-like
PRINTSPR000318.5E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000318.5E-696112IPR000047Helix-turn-helix motif
PfamPF021834.3E-11116147IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MKRLSPSPSL DAFMSISQPK VDYAEETSSK KHQIYSKEFQ AMLDGLDEED SLEEGGQATE  60
KKRRLSMHQV KALEKNFDVG NKLEPERKVK LAKELGLQPR QVAIWFQNRR AHWKTKVLEK  120
DYAMLKANYD ALKLDHDNLE KEKLGLIAMN
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Localized primarily to the hypocotyl of germinating seedlings. {ECO:0000269|PubMed:12678559}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431211e-165AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704371.11e-102PREDICTED: homeobox-leucine zipper protein ATHB-6-like
SwissprotP466678e-43ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A1U8KPH01e-101A0A1U8KPH0_GOSHI; homeobox-leucine zipper protein ATHB-6-like
STRINGGorai.010G037800.12e-99(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-42homeobox protein 6
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]