PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2734
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 514aa    MW: 55503.7 Da    PI: 9.4962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2734genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0579101123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Gh_D11G2734  79 FVCEICNKGFQRDQNLQLHRRGH 101
                  89*******************88 PP
2zf-C2H212.10.00061155177123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Gh_D11G2734 155 WKCDKCSKKYAVQSDWKAHSKTC 177
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-678101No hitNo description
PfamPF121718.2E-579101IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355220120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-6150175No hitNo description
SMARTSM00355150155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSNITGDGGG SFSSETHHQE QQQVGNFHGG SNSLLSTNSN GGSTAPPPAK KKRNLPGTPD  60
PNAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TSTEIRKRVY  120
VCPEPSCVHH NPARALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTK  180
EYKCDCGTIF SRRDSFITHR AFCDALTEEN NKASRGLINV GSNLQGQVVA ADQLISAIPV  240
NNNPNTSAIN ISEPFSNDTK SSLQSLNLAA GTMFSNGSSS LFGGTKVTTV PNPSSTSCLQ  300
LNGNSSTLFE GNGGHLFSGS ASMSATALLQ KAAQMGATAS TGSLNSPLMG KSYTTTSTMA  360
PPSFVSMQTH DNNNNNNQTQ TLGGADSTGF TSQSDFFNAN GGVDQSSSVN NMGVMFSGIF  420
EQNNAFFKSV ESSTPRTTGL SGFSADTMTV DFLGIGGSRP RNLLEKQHHH HHHHHHPHQP  480
QQDLEQFGAI GQARLQGLSH FQQRAVLEKP MWKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34151214366Zinc finger protein JACKDAW
5b3h_F1e-34151214366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.114321e-134root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098825321e-134
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272661e-123HQ527266.1 Gossypium herbaceum clone NBRI_B_5962 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713852.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A1U8LGV00.0A0A1U8LGV0_GOSHI; protein indeterminate-domain 2-like
STRINGGorai.007G298600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1964967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-103C2H2 family protein