PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G3078

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 248aa MW: 28143.6 Da PI: 8.8809

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G3078	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell +++++ G g+W+t +++ g+ R++k+c++rw +yl Gh_D11G3078 25 RGPWTPEEDELLSNYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 72 89****************************99**********97 PP
2	Myb_DNA-binding	47.5	4e-15	83	123	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Gh_D11G3078 83 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-22	16	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.553	20	72	IPR017930	Myb domain
SuperFamily	SSF46689	3.56E-29	22	119	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-13	24	74	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-15	25	72	IPR001005	SANT/Myb domain
CDD	cd00167	5.95E-11	27	72	No hit	No description
PROSITE profile	PS51294	24.397	73	127	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-24	75	128	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-13	77	125	IPR001005	SANT/Myb domain
Pfam	PF00249	6.7E-14	83	123	IPR001005	SANT/Myb domain
CDD	cd00167	2.86E-11	83	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MRNPTKKDNV GTKTTPCCSK VGLKRGPWTP EEDELLSNYI NKEGEGRWRT LPKRAGLLRC 60 GKSCRLRWMN YLRPSVKRGQ IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN 120 THLSKKLISQ GIDPRTHKPL NPQQLSPSPP TLKPSPSSSS SMAKPNNPPS PLPVHVVNAN 180 KQNDYYDGSN EDHQGMIMNN DHYQQQQDHE DDVFSSFLNS LINEDDDALV SNLGLSQGWE 240 STPFDQPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-25	23	127	5	108	B-MYB
1h8a_C	1e-24	23	127	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25274	1e-168	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Siliques. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ198052	0.0	FJ198052.1 Gossypium barbadense MYB-like protein 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434848.1	0.0	PREDICTED: transcription repressor MYB5-like
Swissprot	Q38850	3e-88	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A0D2SPS8	0.0	A0A0D2SPS8_GOSRA; Uncharacterized protein
STRING	Gorai.007G350500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	6e-80	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]