PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3081
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 256aa    MW: 29032.1 Da    PI: 6.7172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3081genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-1369121155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ +hn+ Er RR+++N+ ++ Lr++lP++  ++ ++ls  +++ +  +YI +Lq
  Gh_D11G3081  69 KKLNHNASERVRRRKMNDLYSSLRSMLPPS--EQTRRLSIPATVSRMLKYIPELQ 121
                  6789*************************6..48888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1467135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.17E-1367125No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1068124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.25968120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1069121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-874126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MCALFPVCEW PLDTPIGHQH IISGPFSGFE SFDDFHHFTF PDDLPRIQLD RPMLSAGDTG  60
DENPTTVEKK LNHNASERVR RRKMNDLYSS LRSMLPPSEQ TRRLSIPATV SRMLKYIPEL  120
QSQVEILLQK KQQILSTICK QDDHDLSNQH HQNKTKLSDG FKVSPFTVSG TKVSDTEATI  180
QISTFGPTSQ GIPPLSPILR GLEEDGLFLT DASCFESFGG RVFYNLNFQV ETTYNLEAML  240
LLLNEKLLSL YKKRKA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5820215e-63JX582021.1 Gossypium hirsutum clone NBRI_GE14786 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711964.10.0PREDICTED: transcription factor ORG2-like
TrEMBLA0A1U8LFM30.0A0A1U8LFM3_GOSHI; transcription factor ORG2-like
STRINGGorai.007G353000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-43bHLH family protein