PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3165
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 347aa    MW: 38083.4 Da    PI: 8.9454
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3165genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.1e-4175151177
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  +CqvegCe+dls++k y+ rhkvC  hsk+p+++v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk++
  Gh_D11G3165  75 RCQVEGCEVDLSDVKAYYARHKVCVSHSKSPKAIVAGIEQRFCQQCSRFHQLPEFDKAKRSCRRRLAGHNERRRKQS 151
                  6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-3370137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.47973150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-3974154IPR004333Transcription factor, SBP-box
PfamPF031104.4E-3176149IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEMGSSSLSD SGGSSIDSLN NNALKLGRNI YFNDSSAAVN GGPATMKTQS PPTQPPLGCK  60
KPRVGGMIHG GRPPRCQVEG CEVDLSDVKA YYARHKVCVS HSKSPKAIVA GIEQRFCQQC  120
SRFHQLPEFD KAKRSCRRRL AGHNERRRKQ SPGSLFPSHY SRLSSSVIES NGRGRSFILD  180
FTAYSRVSGK DAWPTMRSLD RIPGNQNTAP EKSLQHHHPW PKNMENPSSG DLFLQGSLGG  240
TGFSGTATSQ GECFTGVSDS SCALSLLSNQ PWGSKNRASA LGVNDMMNTE PMPHDTFVNP  300
YLQTSEPADA QHFGRLELPQ QNSVQHMELE QHSRSYDTSA QYIHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29761491184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.256490.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223230.0KJ622323.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016712173.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotA3C0571e-58SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A1U8LFL50.0A0A1U8LFL5_GOSHI; squamosa promoter-binding-like protein 14
STRINGGorai.007G362000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-55squamosa promoter binding protein-like 9