PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G3168

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 236aa MW: 26061.6 Da PI: 6.6786

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G3168	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.1	7.3e-12	62	96	1	35
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 +g+WT+eEd +lvd+++++G Wk++++ g++R Gh_D11G3168 62 KGPWTPEEDRILVDYIQKHGHSKWKSVPALAGLNR 96 79****************************99766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.86E-9	57	96	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.76	57	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-12	60	95	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-4	61	103	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-9	62	96	IPR001005	SANT/Myb domain
CDD	cd00167	2.22E-6	64	88	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MPINIITILT INTKRTYTHI HYIKKPPTFS QFQHLNYIPS LFSSPIIQFK GMKGNDKNGL 60 KKGPWTPEED RILVDYIQKH GHSKWKSVPA LAGLNRLHQL LAAASFSNLI NNPLDIVNAL 120 MLQSDAVATL AKSLHLSHNM LQALASTPTT MASQDPTKAC STSNEYQFGS SSSSLPVNVP 180 NLDTTPQPIP PMAPRPTIVD DHHETNNITN PSSTTLQEWD DFMDGGEASE DLEVPL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434998.1	8e-90	PREDICTED: transcription repressor MYB6-like isoform X1
TrEMBL	A0A0D2PJS5	1e-88	A0A0D2PJS5_GOSRA; Uncharacterized protein
STRING	Gorai.007G362200.1	2e-89	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	2e-16	myb domain protein 92