PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3181
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 85aa    MW: 10240.1 Da    PI: 10.5423
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3181genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.41.1e-091060251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E.EEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdae.vaviifsstgklyeyss 51
                 ri n+s + + + kRr g++KK +EL +L + +   vi++  + +l  +ss
  Gh_D11G3181 10 RIPNDSAKRTCLKKRRLGLMKKMSELTILYGGNtYHVIYYPDESELILWSS 60
                 899**************************7655167999999999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-6160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.517148IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-16184IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-6323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-101051IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MRRKKVMLTR IPNDSAKRTC LKKRRLGLMK KMSELTILYG GNTYHVIYYP DESELILWSS  60
HNEVQQKLDE YRKTHKLDQL KKMVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVMLTRIPNDSAKRTCLKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488326.17e-25PREDICTED: MADS-box transcription factor PHERES 1-like
RefseqXP_016722546.17e-25PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLA0A0D2R4Y92e-53A0A0D2R4Y9_GOSRA; Uncharacterized protein
STRINGGorai.007G363600.14e-54(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-10AGAMOUS-like 80