PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3348
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 288aa    MW: 31258.2 Da    PI: 7.6511
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3348genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.81.6e-3085138155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Gh_D11G3348  85 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 138
                  59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05982141IPR017930Myb domain
SuperFamilySSF466892.6E-2082142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-3084143IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-2486138IPR006447Myb domain, plants
PfamPF002491.1E-788137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MREIEDSSNL FGKWEEELPS PEELMPLSQT LITPHLALAF DISNPNHRQR KHPPPPPPPP  60
AEFAGDSGDL GSGAGGDEPA RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS  120
VDGLTRENVA SHLQKYRLYL KRMQGSGGGG ANGGAASDPA TDHLFASSPV PPHFLHPSKG  180
SSEPFAPFVS VPGLQHHYQQ QQHQLAAAAA VGHPHLLTQY QKQIGHFGSS PNGQLEHPFL  240
AKQPPPSIRR MGGTPSHNQV PNNYVEDLES ANGNGGMKVL TLFPPRDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-3285141157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.141410.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434866.11e-166PREDICTED: transcription factor PCL1-like isoform X1
SwissprotO222106e-64MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A0D2SVT91e-157A0A0D2SVT9_GOSRA; Uncharacterized protein
STRINGGorai.007G351500.11e-158(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-72G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]