PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G3363

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 114aa MW: 12845.7 Da PI: 10.309

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G3363	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.1	2.6e-10	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G++ Wk++a+ + +R+++++ Gh_D11G3363 45 QWSKAEIEQFYKAYREHGKD-WKKVAAAVH-NRSAEMV 80 6***************99.*****.*9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.49E-11	41	89	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-4	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-7	44	81	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-9	45	80	IPR001005	SANT/Myb domain
CDD	cd00167	3.40E-7	46	80	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKKLTD KLGTQWSKAE IEQFYKAYRE 60 HGKDWKKVAA AVHNRSAEMV EALYSMNRAY LSLPDGTASV IGLIAMMTDH YNVL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016718189.1	2e-72	PREDICTED: protein ALWAYS EARLY 2-like isoform X1
Refseq	XP_016718193.1	2e-72	PREDICTED: protein ALWAYS EARLY 2-like isoform X4
Swissprot	Q6A331	5e-44	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	A0A1U8LXQ8	3e-71	A0A1U8LXQ8_GOSHI; protein ALWAYS EARLY 2-like isoform X4
TrEMBL	A0A1U8LY50	3e-71	A0A1U8LY50_GOSHI; protein ALWAYS EARLY 2-like isoform X1
STRING	Gorai.007G342200.1	7e-72	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21251	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-34	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]