PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3512
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 254aa    MW: 29333 Da    PI: 6.8828
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3512genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.39e-51101371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF P+deelv++yL kk++++++    ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ vl+  ++
  Gh_D11G3512  10 LPPGFRFYPSDEELVCHYLYKKIANEQVLK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRMVLDPtTE 106
                  79************************9655.78***************88888999**************************************9778 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  e+vg++ktLvfy++rap+g kt W+mhe+rl
  Gh_D11G3512 107 EVVGMRKTLVFYRNRAPNGIKTGWIMHEFRL 137
                  88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-618156IPR003441NAC domain
PROSITE profilePS5100557.40610156IPR003441NAC domain
PfamPF023657.4E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANEQVLKG TLVEIDLHTC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRMV LDPTTEEVVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLHTP HLPPKEEWVL CRVFHKSKEE NSAKLSSPMM LETSSTHHAH  180
ETAYQHISSL STTTPTYQSH AQCLLNLLQY NSHQENNSNE VSSKVHDGYE FLWDMEENSL  240
GCSWGGFQLG GHEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-48915616165NO APICAL MERISTEM PROTEIN
1ut4_B9e-48915616165NO APICAL MERISTEM PROTEIN
1ut7_A9e-48915616165NO APICAL MERISTEM PROTEIN
1ut7_B9e-48915616165NO APICAL MERISTEM PROTEIN
3swm_A8e-48915619168NAC domain-containing protein 19
3swm_B8e-48915619168NAC domain-containing protein 19
3swm_C8e-48915619168NAC domain-containing protein 19
3swm_D8e-48915619168NAC domain-containing protein 19
3swp_A8e-48915619168NAC domain-containing protein 19
3swp_B8e-48915619168NAC domain-containing protein 19
3swp_C8e-48915619168NAC domain-containing protein 19
3swp_D8e-48915619168NAC domain-containing protein 19
4dul_A9e-48915616165NAC domain-containing protein 19
4dul_B9e-48915616165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.34460.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472170.0KC847217.1 Gossypium hirsutum NAC domain protein NAC40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708926.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE62e-62NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1U8L6N50.0A0A1U8L6N5_GOSHI; protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A2P5SL880.0A0A2P5SL88_GOSBA; Uncharacterized protein
STRINGGorai.007G147300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-91NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]