PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3532
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 375aa    MW: 41724.5 Da    PI: 6.651
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3532genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.5e-19291325135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l
  Gh_D11G3532 291 CSHCGVTKTPQWRAGPMGVKTLCNACGVRFKSGRL 325
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.229285321IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-17285339IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-13287348No hitNo description
Gene3DG3DSA:3.30.50.104.8E-15289323IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.02E-14290338No hitNo description
PROSITE patternPS003440291316IPR000679Zinc finger, GATA-type
PfamPF003201.4E-16291325IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDAFYHHSML YQTHHHPFFF KFPPLASTTP LLLSSSLQEM ECVEAALKTS FRKEMALKSS  60
PQAFLEDIWV VNNGQNGVSC DDFSVDDLFD FTHEEGFLEQ QHEDEEEEEE QVPVSSSHKR  120
QKLSQEHHFS NDTINFDYSS LSTNELAVPA DDVANLEWLS HFVEDSFSEY SAAAYPAGML  180
TEKPNLPDHK LPKPEKPVTT CFKTRVPGKA RSKRSRTGGR VWCLVASPPF TESSSSSSSS  240
SSSSPSASSP WFLCSGSTLE LSESLSMEKK HKKRPATEST IGNGTQPTRR CSHCGVTKTP  300
QWRAGPMGVK TLCNACGVRF KSGRLLPEYR PACSPTFSSE LHSNHHRKVL EMRRKREAPG  360
EAEPGSVPTS VPSFG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.103410.0boll| ovule| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695538.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH572e-88GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1U8K3H20.0A0A1U8K3H2_GOSHI; GATA transcription factor
STRINGGorai.007G049700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-80GATA transcription factor 5