PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0019
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 221aa    MW: 25672.4 Da    PI: 10.8993
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0019genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind83.62.8e-26158425103
                   SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                   g+sfvv+d++++++++Lp++Fkh+nf+SFvRQLn+YgF+k+++e+         weF+++ F kg+k+ll++ikr+k++
   Gh_D12G0019  15 GSSFVVWDTHSLSSNLLPRFFKHNNFSSFVRQLNTYGFRKIDSEK---------WEFANEGFIKGQKHLLNSIKRRKNT 84 
                   689***************************************998.........**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.1E-30981IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-221581IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.1E-251581IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-221581IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-103042IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-104355IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MWTRRGVPPS KAFGGSSFVV WDTHSLSSNL LPRFFKHNNF SSFVRQLNTY GFRKIDSEKW  60
EFANEGFIKG QKHLLNSIKR RKNTSQTPVV IQQSLGSCVE DGEVDRLRRD RRVLMMELVK  120
LRQQQHNTRA HIKAMEQRLQ GTEKKQQQMM SFLASAMQNP AFLNQLMQQK EERMELEEAM  180
CKKRRRLRPV SFVHVGESSR SSGGGSNPVK TEVLEFGDYG Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-1518124120Heat shock factor protein 1
5hdg_A4e-1518114110Heat shock factor protein 1
5hdn_A4e-1518114110Heat shock factor protein 1
5hdn_B4e-1518114110Heat shock factor protein 1
5hdn_C4e-1518114110Heat shock factor protein 1
5hdn_D4e-1518114110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110RLRRDR
2182186KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612171.11e-123PREDICTED: heat stress transcription factor A-7a
SwissprotQ6VBB22e-76HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A2P5RK381e-122A0A2P5RK38_GOSBA; Uncharacterized protein
STRINGGorai.004G076900.11e-104(Gossypium raimondii)
STRINGEOX946441e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.19e-58heat shock transcription factor A7A
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]