PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G0132

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 198aa MW: 22764.4 Da PI: 4.5977

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G0132	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.7	3.2e-38	9	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e ++wyf+s+r +nr+t +gyWk g +++v++++++ Gh_D12G0132 9 LPPGFRFCPTDEELVVHFLQRKAALLPCHP-DVIPDLELYPHDPWELDGKALGEGNQWYFYSRRT--------QNRITGNGYWKPMGIEEDVINSRSK 97 79***********************999.99**********977778899**984........589****************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+ + kt+W+m+eyrl Gh_D12G0132 98 KVGMKKYLVFYIGEGTAAIKTNWIMQEYRL 127 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-47	6	158	IPR003441	NAC domain
PROSITE profile	PS51005	44.461	9	159	IPR003441	NAC domain
Pfam	PF02365	9.4E-24	10	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGENSSVNLP PGFRFCPTDE ELVVHFLQRK AALLPCHPDV IPDLELYPHD PWELDGKALG 60 EGNQWYFYSR RTQNRITGNG YWKPMGIEED VINSRSKKVG MKKYLVFYIG EGTAAIKTNW 120 IMQEYRLSKS DSSSTKSSKR RGHSKVDYSK WVVCRVYERN CSEDEDDGDD DDDGTQLSCL 180 DEVFLSLDDM DEISLPFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-42	5	165	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-42	5	165	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-42	5	165	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-42	5	165	13	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-42	5	165	16	174	NAC domain-containing protein 19
3swm_B	5e-42	5	165	16	174	NAC domain-containing protein 19
3swm_C	5e-42	5	165	16	174	NAC domain-containing protein 19
3swm_D	5e-42	5	165	16	174	NAC domain-containing protein 19
3swp_A	5e-42	5	165	16	174	NAC domain-containing protein 19
3swp_B	5e-42	5	165	16	174	NAC domain-containing protein 19
3swp_C	5e-42	5	165	16	174	NAC domain-containing protein 19
3swp_D	5e-42	5	165	16	174	NAC domain-containing protein 19
4dul_A	5e-42	5	165	13	171	NAC domain-containing protein 19
4dul_B	5e-42	5	165	13	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847241	0.0	KC847241.1 Gossypium hirsutum NAC domain protein NAC64 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436013.1	1e-145	PREDICTED: NAC domain-containing protein 55-like isoform X1
Swissprot	Q8GWK6	2e-85	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0D2TV45	1e-144	A0A0D2TV45_GOSRA; Uncharacterized protein
STRING	Gorai.008G014700.1	1e-145	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	8e-79	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]