PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0238
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 114aa    MW: 13343.5 Da    PI: 8.8638
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0238genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-1115951489
                 T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
           B3 14 grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89
                 +rl+lp +++ +    +g+ e+++t +++d     W+++++  ++  +r  +++ W +Fv++++L++gD+v F+ d++  +
  Gh_D12G0238 15 RRLILPIDCLPALprfEGSYENGITFQVMDDVEILWNFRCKKrNGAADRLAIETDWIQFVNSKKLRSGDIVAFYKDDDrVS 95
                 46888888887778887778899*****************764555666*************************7644333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-13393IPR015300DNA-binding pseudobarrel domain
CDDcd100175.79E-10392No hitNo description
SMARTSM010190.00984102IPR003340B3 DNA binding domain
SuperFamilySSF1019363.4E-107105IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-81597IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MQLFARALTR IEVERRLILP IDCLPALPRF EGSYENGITF QVMDDVEILW NFRCKKRNGA  60
ADRLAIETDW IQFVNSKKLR SGDIVAFYKD DDRVSGTLCK IEVKRRTSIY NKEL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435299.13e-77PREDICTED: auxin response factor 8-like
TrEMBLA0A2P5VSK62e-77A0A2P5VSK6_GOSBA; Uncharacterized protein
STRINGGorai.008G027000.11e-43(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2822423