PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G0347

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 292aa MW: 33906.5 Da PI: 6.5397

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G0347	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.6	8.9e-48	17	143	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPt+eel+ +yLk+ + g+kl+ +vi ++iy+++PwdLp k +e+ewyfF++rd+k+ +g r+nr+t++gyWkatg+d++++s ++ Gh_D12G0347 17 PGFRFHPTEEELLGFYLKNMIYGNKLRY-DVIGFLNIYHHDPWDLPGLSKIGEREWYFFVPRDRKHGNGGRPNRTTENGYWKATGSDRKIVSLsdPKR 113 9************************9.99***********8778899*********************************99766677 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfykgrap+g+ktdWvm+eyrl Gh_D12G0347 114 ITGLKKTLVFYKGRAPRGNKTDWVMNEYRL 143 7*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.507	15	161	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-57	16	161	IPR003441	NAC domain
Pfam	PF02365	1.4E-25	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MNCQSNSDDT TLEMELPGFR FHPTEEELLG FYLKNMIYGN KLRYDVIGFL NIYHHDPWDL 60 PGLSKIGERE WYFFVPRDRK HGNGGRPNRT TENGYWKATG SDRKIVSLSD PKRITGLKKT 120 LVFYKGRAPR GNKTDWVMNE YRLPDGCSLP KDIVLCKIYR KATSLRVLEQ RAALEEELEA 180 TNTTTSSPLS SLETISFRSP KEDLVPSISE TREFFKKEIE EEKEAMVEEK KDIIAKENKV 240 SPPSLQFPVG NEKLAELQLP KIINDWTQDQ FWTQLNSPWF QNLTPYANIL NF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-46	9	161	8	168	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.18851	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC110646	0.0	KC110646.1 Gossypium hirsutum NAC protein 11 (NAC11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016734429.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q10S65	1e-97	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1U8N9H8	0.0	A0A1U8N9H8_GOSHI; putative NAC domain-containing protein 94
STRING	Gorai.008G038800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-108	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]