PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0397
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 232aa    MW: 26259.1 Da    PI: 8.8179
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0397genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer69.65.3e-2267115356
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 
                   +rYkeC++NhAas+G +a+DGCg f+       + + + CaACgCHR+FHR++
  Gh_D12G0397  67 ICRYKECRRNHAASIGRYAIDGCGGFICC-----KDDLFMCAACGCHRSFHRKD 115
                  589*************************8.....34689*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1058115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.6E-1768115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-1769115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.21570115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.3E-21161229IPR009057Homeodomain-like
SuperFamilySSF466898.32E-14162229IPR009057Homeodomain-like
PROSITE profilePS500718.665166230IPR001356Homeobox domain
TIGRFAMsTIGR015651.9E-20170224IPR006455Homeodomain, ZF-HD class
CDDcd000860.00709171229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MQFFPFKEQF HLPNHPTNTA LLIINSLSLM EGETSNVVIK VEAESDVEPI SVQRCCSLVS  60
DQSNERICRY KECRRNHAAS IGRYAIDGCG GFICCKDDLF MCAACGCHRS FHRKDYLPPP  120
PQPKLMPSCL APLPLASHNG LTGETSLFVK DRNNTVAGPG AEEQNTNKEA KRTRLTVEQK  180
NKMMRFADKL GWRSQGHDDA EIRQFCEQVG ITKRVFVVWL NNNRRRSRKG SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-151722242173ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5880261e-148JX588026.1 Gossypium hirsutum clone NBRI_GE22331 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016699874.11e-174PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBLA0A1U8KGP11e-173A0A1U8KGP1_GOSHI; zinc-finger homeodomain protein 2-like
STRINGGorai.008G044700.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1866867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.16e-31homeobox protein 26