PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0398
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 171aa    MW: 19271.5 Da    PI: 4.6237
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0398genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer734.5e-233892457
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                  +Y eC++N  a +G + vDGC  fm+ + +e  t++al Ca CgCHR+FHR+ +
  Gh_D12G0398 38 ETYMECRRNYLAPIGRYIVDGCEKFMKRSASEdQTKEALFCAGCGCHRSFHRKVM 92
                 68*************************98888799******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015667.3E-193990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-213991IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.0544091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-104090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEKSIKTDEI NKAAVVVEVE ANSVQGMDGD GVDEQGGETY MECRRNYLAP IGRYIVDGCE  60
KFMKRSASED QTKEALFCAG CGCHRSFHRK VMPPQPHVQD NTRFHRIMDF LYSLPLTRLE  120
PRPPAPWLMR SLQQQQLSNY ELVEGQGSSL SPEEGEEKTD SESGDEVNQA V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016699872.11e-127PREDICTED: zinc-finger homeodomain protein 2-like
RefseqXP_016729864.11e-127PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBLA0A1U8MWB01e-126A0A1U8MWB0_GOSHI; zinc-finger homeodomain protein 2-like
STRINGGorai.008G044800.11e-125(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2207645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.12e-15mini zinc finger 1