PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0520
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 286aa    MW: 32588.9 Da    PI: 8.2206
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0520genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.73.9e-13221245226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ + + G C+yG+ C+FaHg
  Gh_D12G0520 221 KTELCDKWEEIGSCPYGEHCQFAHG 245
                  8***********************8 PP
2zf-CCCH20.11.1e-06258283126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt  Cr  +++ +C+yG rC+F H+
  Gh_D12G0520 258 YKTQACRMVLAGQICPYGHRCHFRHS 283
                  9**********99**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.1E-17215252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.33E-9216251IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6219246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14219247IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10221245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-11253286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8254285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291257285IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5257284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEKITSLSSG QDTIFAATAT SCAPIYDQNY VSPPPFQTNH QQCHQDIAAD FSSMYNFIFP  60
PHSLPLSPSS CSSSSSNDSH LNLNLTSDAI ATKHRLKQAR LVLEYDQLCD HYNICFARLQ  120
ALNRDIETLR RENSDLLVAN NELMKLLNLS SMAVMNNRNL QRKELPKSVS VRSSNYLKLN  180
HQQGPRNQQR VVNPLLGVQV SSEWRREKAI ELNVYNQGMA KTELCDKWEE IGSCPYGEHC  240
QFAHGITELR PVIRHPRYKT QACRMVLAGQ ICPYGHRCHF RHSLTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21221286570Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702025.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N32e-67C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1U8KHT60.0A0A1U8KHT6_GOSHI; zinc finger CCCH domain-containing protein 14-like
STRINGGorai.008G057400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-69C3H family protein