PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G0569

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 280aa MW: 31424.5 Da PI: 7.0716

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G0569	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	8.9e-20	33	94	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psa+++++++++l +++ ++V++WFqN++a+e++ Gh_D12G0569 33 STRWTPTTDQIRILKDLYYNngVRSPSADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 94 58***************8678***********************************97 PP
2	Wus_type_Homeobox	114.4	5.7e-37	32	96	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Gh_D12G0569 32 SSTRWTPTTDQIRILKDLYYnNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 96 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.71E-11	20	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.317	29	95	IPR001356	Homeobox domain
SMART	SM00389	1.1E-5	31	99	IPR001356	Homeobox domain
CDD	cd00086	2.82E-7	34	96	No hit	No description
Pfam	PF00046	4.0E-17	34	94	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-7	34	94	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEPQQQQQQN QQAPNEDCGG GSGKGSFLCR QSSTRWTPTT DQIRILKDLY YNNGVRSPSA 60 DQIQRISARL RQYGKIEGKN VFYWFQNHKA RERQKKRFTT TTNHHVPMQS PTTAANNKYP 120 NITPGCYSPT SLSSTGALTV GQIGNYGYGS ITMEKSFRDC SISACGSSTS VGESLSHNFG 180 WVGFDPTYSS SYTFFEHKKF MEERQKDEDD AEEEAAAPQI ETLPLFPMHS EDANGFCSNI 240 RPRLDSCYSG WYRSEDGYTG SRASLELSLN PYAGRPQDSI

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269\|PubMed:12208843}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	9e-71	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435648.1	0.0	PREDICTED: protein WUSCHEL-like
Swissprot	Q8LL11	2e-87	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A0D2T1D4	0.0	A0A0D2T1D4_GOSRA; Uncharacterized protein
STRING	Gorai.008G063200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5244	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	4e-49	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]