PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0611
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 614aa    MW: 67668.2 Da    PI: 5.1042
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0611genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.44.9e-1132476142374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++Ll+cA+ +s+++ e+a + L +l+e +s++gdp++R+a+yft+AL +r++       k l+  et+   s++ + ++k++++++P+ kf+hltaN
  Gh_D12G0611 247 LKALLDCAR-LSDSEPERAIKSLVELRESVSERGDPTERVAFYFTQALYSRVSL---PAEKRLNLLETT---SEDFTLSYKVLNDACPYSKFAHLTAN 337
                  689*****9.677799999999*******************************9...677788888888...89999********************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l +tg+rL++fA+ l+++fef++ + + +++l+ + +
  Gh_D12G0611 338 QAILEATERATKIHIVDFGIVQGVQWAALLQALAARSAGKPtRIRISGIPAPVLGssPAPSLYATGNRLRDFAKLLDLNFEFEP-ILTPIKELKESCF 434
                  *************************************77666*********998888999************************.799********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+++E+laVn++lql++lld +  + +   + L l ksl+Pk+v++ e ea++n+  F++rf +al+yy+a+f+sle +lpr+s er+ vEr+llg 
  Gh_D12G0611 435 RVDNDEVLAVNFMLQLYNLLDATPVTVE---AALCLAKSLNPKIVTLGEYEASLNRVGFVNRFKNALRYYTAVFESLEPNLPRDSPERVEVERQLLGG 529
                  ********************88777777...9****************************************************************** PP

         GRAS 293 eivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  +i  ++ +e+ae rrer+e +e+W+  +e+aGF++v+ls++a +qak ll +++ s  y++ e++  ++ l Wk+ pL++vS+Wr
  Gh_D12G0611 530 KIGAIIGAEEAEkRRERMEDKEQWKVLMESAGFETVSLSHYAISQAKILLWNYNySSSYSLIESKPGFLtLAWKEVPLLTVSSWR 614
                  ******9999888*****************************************9999998877666555**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.439220592IPR005202Transcription factor GRAS
PfamPF035141.7E-110247614IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QQQQQEQQQE QHHHHQQQLL GVSHVTLNPW PNNPHHGVSN  60
SPILGYGLSG PGFTDLFQGD TGEGFQFPNM GHHHSSGFRF PDFGGGSGGE FDTDEWMDCL  120
MNSGDSTDSS NLPSGCEVWQ NNADFGLYGA DPFSACPNRL SVACPTPSDL NRVIFPTEAQ  180
KNLSPTLQPQ HQLPTWSPSP SPPPPPPPHV AVKETKASSP PSQTPLTNDA AGVSADSTEI  240
ESAPPLLKAL LDCARLSDSE PERAIKSLVE LRESVSERGD PTERVAFYFT QALYSRVSLP  300
AEKRLNLLET TSEDFTLSYK VLNDACPYSK FAHLTANQAI LEATERATKI HIVDFGIVQG  360
VQWAALLQAL AARSAGKPTR IRISGIPAPV LGSSPAPSLY ATGNRLRDFA KLLDLNFEFE  420
PILTPIKELK ESCFRVDNDE VLAVNFMLQL YNLLDATPVT VEAALCLAKS LNPKIVTLGE  480
YEASLNRVGF VNRFKNALRY YTAVFESLEP NLPRDSPERV EVERQLLGGK IGAIIGAEEA  540
EKRRERMEDK EQWKVLMESA GFETVSLSHY AISQAKILLW NYNYSSSYSL IESKPGFLTL  600
AWKEVPLLTV SSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1462456143375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.200640.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735341.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_016735342.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_016735343.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_016735344.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_016735345.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_016735346.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1U8N8A90.0A0A1U8N8A9_GOSHI; scarecrow-like protein 4
STRINGGorai.008G068100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein