PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G0701

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 232aa MW: 25431 Da PI: 8.2088

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G0701	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.4	3.4e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e Gh_D12G0701 2 SCNGCRVLRKGCSESCILRPCLqwidsPEAQGHATIFVAKFFGRAGLMSFISAVPESQRSALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Gh_D12G0701 100 TVLR 103 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.448	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDSPE AQGHATIFVA KFFGRAGLMS FISAVPESQR 60 SALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLREGTVRAV PELMAPSPAS 120 GEKSEATKIA CMLKLQETET KFNSTCRFST SRSKVSPKRI KVEEFSKFQP SDLDLCLTPS 180 STGNRLPDNR RPGTPSLNSE ESVTTTCFER GFADQQQQGG ETDRIKLLNL FV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2811	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016734826.1	1e-171	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SZE8	5e-83	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A1U8N6V2	1e-170	A0A1U8N6V2_GOSHI; LOB domain-containing protein 38-like
STRING	Gorai.008G081100.1	1e-165	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-85	LOB domain-containing protein 39