PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G0872

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 398aa MW: 43903.6 Da PI: 9.3434

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G0872	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.5	5.7e-08	77	108	13	44
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNka 44 NReAAr+sR+RKka++++Le+ L++ ++ Gh_D12G0872 77 NREAARKSRLRKKAYVQQLENSRLRLTELEQE 108 ********************976666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-6	75	105	No hit	No description
SuperFamily	SSF57959	5.49E-6	76	112	No hit	No description
Pfam	PF07716	8.2E-5	77	111	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-8	154	203	IPR025422	Transcription factor TGA like domain
CDD	cd06222	2.26E-12	256	367	No hit	No description
Pfam	PF13456	2.2E-12	257	368	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MSIGATAIVS SGTGCLDTGQ FMYQKGATFG APLGNGQIEN SADSGLAYNS QQTDTSTDVD 60 ADHKKQLHGI QHGAVMNREA ARKSRLRKKA YVQQLENSRL RLTELEQELQ RARQQGIFIA 120 SGLSGDHGHT VAGNAALAFD MEYGRWLDEH QQLINDIRLA VNSHMGDNEL CVLVGGVMAY 180 YDEVFRLKST GAKADVFHML SVRNRCIHER KKVTTLETTG FVRSYLRELD GLKVVLPIKP 240 KVEELWKPPK SPFVKINFDV TFRKDEHKSC SGIVVRDSEG MVLGSRVVHN GWVPLVFAVE 300 ATVCSQGLQM GLDLGAIAVR VEGDALSVIK KLQKVEEDKS EISATIKVCL WSSKGFQMCK 360 FVNGKRSKKE CVKLLMGIVL ISVLMKLGEG KSFGKWKG

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MSIGATAIVS SGTGCLDTGQ FMYQKGATFG APLGNGQIEN SADSGLAYNS QQTDTSTDVD  60
ADHKKQLHGI QHGAVMNREA ARKSRLRKKA YVQQLENSRL RLTELEQELQ RARQQGIFIA  120
SGLSGDHGHT VAGNAALAFD MEYGRWLDEH QQLINDIRLA VNSHMGDNEL CVLVGGVMAY  180
YDEVFRLKST GAKADVFHML SVRNRCIHER KKVTTLETTG FVRSYLRELD GLKVVLPIKP  240
KVEELWKPPK SPFVKINFDV TFRKDEHKSC SGIVVRDSEG MVLGSRVVHN GWVPLVFAVE  300
ATVCSQGLQM GLDLGAIAVR VEGDALSVIK KLQKVEEDKS EISATIKVCL WSSKGFQMCK  360
FVNGKRSKKE CVKLLMGIVL ISVLMKLGEG KSFGKWKG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25255	4e-99	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438631.1	1e-114	PREDICTED: transcription factor HBP-1b(c38)-like
TrEMBL	A0A2P5QJ12	0.0	A0A2P5QJ12_GOSBA; Uncharacterized protein
STRING	Gorai.008G185000.1	1e-114	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	2e-47	bZIP family protein