PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1041
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 469aa    MW: 52933 Da    PI: 8.4232
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1041genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.51.1e-21198250155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kp+l Wt+eLH+rF++a++ L Gse A Pk+il+lm+v+gL  e+v SHLQk+Rl
  Gh_D12G1041 198 KPKLIWTNELHNRFLQAIDML-GSE-AYPKKILQLMNVPGLRKENVSSHLQKHRL 250
                  79*******************.665.9***************************8 PP
2Response_reg51.74.9e-18181261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vd + + + +l ++l++ gy +v +++ +++al ++  +++++Dl+l+   + +md +ell++ir+ + +lpiiv+++  + + +l  l  Ga 
   Gh_D12G1041  18 VLLVDGDSTCLIILSKMLRSFGY-KVVTTKRATDALCIIrdQQHKIDLVLTEACLHDMDKYELLETIRNIS-SLPIIVMSTDYDRNAVLGSLFKGAA 112
                   89*********************.***************555555************************99.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                    +l+Kp+ ++++ +
   Gh_D12G1041 113 LHLEKPITMDDIKN 126
                   *********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.13E-2215132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.0E-2315139No hitNo description
SMARTSM004486.1E-1316128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.83617132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-1318126IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.99E-1519132No hitNo description
SuperFamilySSF466895.73E-15195254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-22197254IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-19198250IPR006447Myb domain, plants
SuperFamilySSF578507.78E-16379426No hitNo description
Gene3DG3DSA:3.30.40.101.9E-15384430IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001627.92E-9387426No hitNo description
PfamPF136394.5E-11387428IPR001841Zinc finger, RING-type
SMARTSM001844.9E-5388458IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.217388430IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAISVESNMN NVYAGVTVLL VDGDSTCLII LSKMLRSFGY KVVTTKRATD ALCIIRDQQH  60
KIDLVLTEAC LHDMDKYELL ETIRNISSLP IIVMSTDYDR NAVLGSLFKG AALHLEKPIT  120
MDDIKNLWQF TLIKGREINV PIIEAKSCIK EVSSIESALG VVVDGRRNLR DEKRKRPLEV  180
ENDKEGDNWD QGSSTLKKPK LIWTNELHNR FLQAIDMLGS EAYPKKILQL MNVPGLRKEN  240
VSSHLQKHRL SLKRQQEAIL NTISSTESQA ASHHALSEFS PRNGFHLFTD TTQTTNRTVK  300
KMMSSGMNLI TTAIAFATSV IFIVFICSRI ICGRIRGSQS RQMFHTQSEI DLQQAEGQTR  360
GLEPVVVAAI PALRFNSETF TYIEDTQCSI CLGDYQEKQV LRIMPKCGHN FHLSCIDLWL  420
RKQSTCHVYR LPLQDIGETK QMRAATFRTM ITLQSPQCSS SSTNSDMNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17197254462ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016731318.10.0PREDICTED: two-component response regulator ARR1-like
TrEMBLA0A1U8N0N40.0A0A1U8N0N4_GOSHI; two-component response regulator ARR1-like
TrEMBLA0A2P5QS470.0A0A2P5QS47_GOSBA; Uncharacterized protein
STRINGGorai.008G116600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1721079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-54response regulator 1